PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11223.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 263aa    MW: 29875.3 Da    PI: 10.7582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11223.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.7e-1714100198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk l  +d ++++ l++p  f+++ + +  ++   +l+ +sg+ W+v+l   k+++++++ +GW++Fv+ + +++gD ++F++dg
  mrna11223.1-v1.0-hybrid  14 FFKGL--KDDFSRQ-LRIPSAFIKKLNTS--SP--HRLRGPSGEYWDVEL--GKRGNQMFFHRGWEKFVQHHPVEVGDLLIFSYDG 90 
                              67777..7788776.********988644..33..799************..*********************************9 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                               s f  +v+++ 
  mrna11223.1-v1.0-hybrid  91 VSMF--NVRIYG 100
                              9888..777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-188103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-1910104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.43511102IPR003340B3 DNA binding domain
CDDcd100176.83E-161299No hitNo description
PfamPF023621.1E-141499IPR003340B3 DNA binding domain
SMARTSM010191.8E-1014102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-10154252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-12154252IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.572158253IPR003340B3 DNA binding domain
SMARTSM010190.011162253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MARKIQRSAR RPAFFKGLKD DFSRQLRIPS AFIKKLNTSS PHRLRGPSGE YWDVELGKRG  60
NQMFFHRGWE KFVQHHPVEV GDLLIFSYDG VSMFNVRIYG KTFCEKNVKA AKSSSESNGN  120
GNAAKRSDKL RRRRYGHAEK RRGVDDEEEI FIPFQSENPF VYRTLGTNSL YEVHVPREVI  180
RKEGYRVGMT LEIKDVFGIS WKATVGGSPE AGRMLIRSGL PNICRANQAS PGDTVIFEFV  240
KPGVVQLHVI KAGAYKQPRI IK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133DKLRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11223.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292711.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A2P6PXD61e-104A0A2P6PXD6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004292711.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.14e-15B3 family protein