PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna11086.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 250aa    MW: 28382.3 Da    PI: 5.9858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna11086.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1968116355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  mrna11086.1-v1.0-hybrid  68 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 116
                              9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.8E-3967130IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2267125IPR016177DNA-binding domain
PROSITE profilePS5103223.77567124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3267125IPR001471AP2/ERF domain
PfamPF008474.5E-1268116IPR001471AP2/ERF domain
PRINTSPR003675.7E-126879IPR001471AP2/ERF domain
CDDcd000181.30E-3368125No hitNo description
PRINTSPR003675.7E-1290106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MCGGDRIAEF IPRNRRRVSA EIWPDNFFNS DLTTPCHKVD SPSTKTPQPI SGGVQEQKPA  60
KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE ARKIRGKKAK  120
VNFPNEDDQD YNPHQTHLRV SNSNPAHHPC QLNNTENSGS GSEGTYSSTG LVGCIHDEKE  180
KEESIQGNTI VAAEENEVQK LSEELMAYEN YMKFYQIPYL DGQSIAPVNP TAQESMVDDL  240
WIFDDENEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2268124360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-22681261574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna11086.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844361e-112KP784436.1 Rosa chinensis putative AP2/ERF2 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290817.10.0PREDICTED: ethylene-responsive transcription factor ERF071 isoform X2
TrEMBLA0A3Q8TDI81e-174A0A3Q8TDI8_FRAAN; Transcription factor ERF55
STRINGXP_004290816.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-42ERF family protein