PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11086.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 250aa MW: 28382.3 Da PI: 5.9858 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 68 | 116 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g mrna11086.1-v1.0-hybrid 68 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 116 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.8E-39 | 67 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 67 | 125 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 67 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 67 | 125 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-12 | 68 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.7E-12 | 68 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-33 | 68 | 125 | No hit | No description |
PRINTS | PR00367 | 5.7E-12 | 90 | 106 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MCGGDRIAEF IPRNRRRVSA EIWPDNFFNS DLTTPCHKVD SPSTKTPQPI SGGVQEQKPA 60 KRQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE ARKIRGKKAK 120 VNFPNEDDQD YNPHQTHLRV SNSNPAHHPC QLNNTENSGS GSEGTYSSTG LVGCIHDEKE 180 KEESIQGNTI VAAEENEVQK LSEELMAYEN YMKFYQIPYL DGQSIAPVNP TAQESMVDDL 240 WIFDDENEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 68 | 124 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 6e-22 | 68 | 126 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11086.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP784436 | 1e-112 | KP784436.1 Rosa chinensis putative AP2/ERF2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290817.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071 isoform X2 | ||||
TrEMBL | A0A3Q8TDI8 | 1e-174 | A0A3Q8TDI8_FRAAN; Transcription factor ERF55 | ||||
STRING | XP_004290816.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 4e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna11086.1-v1.0-hybrid |