PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna11073.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 67aa MW: 7518.11 Da PI: 11.7625 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.8 | 7.6e-15 | 12 | 45 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 k+i+n rqvtf kRr g+lKKA EL vLCd e mrna11073.1-v1.0-hybrid 12 KKIDNLPVRQVTFLKRRRGLLKKAGELLVLCDCE 45 6899999*************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-10 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.67 | 4 | 45 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-16 | 5 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-12 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.0E-12 | 13 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-12 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MTKRARNKIK IKKIDNLPVR QVTFLKRRRG LLKKAGELLV LCDCENFKVK TRPNVGSISP 60 VSVPSK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna11073.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299728.1 | 5e-19 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Refseq | XP_011464657.1 | 5e-19 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
Refseq | XP_011464658.1 | 5e-19 | PREDICTED: MADS-box protein JOINTLESS-like | ||||
TrEMBL | A0A2P6PH14 | 6e-14 | A0A2P6PH14_ROSCH; Putative transcription factor MADS-MIKC family | ||||
STRING | XP_004299728.1 | 2e-18 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-09 | AGAMOUS-like 24 |
Link Out ? help Back to Top | |
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Phytozome | mrna11073.1-v1.0-hybrid |