PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10994.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 185aa    MW: 20981.4 Da    PI: 5.7343
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10994.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.62.1e-081221552154
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              k +yp++e++++L +++gL+ +q+ +WF N+R +
  mrna10994.1-v1.0-hybrid 122 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 155
                              469*****************************87 PP
2ELK30.39.3e-117697122
                      ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                             ELKh+L+++Y+++++++++E++
  mrna10994.1-v1.0-hybrid 76 ELKHELKQGYKEKIVDIREEIL 97
                             9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037893.3E-77697IPR005539ELK domain
PROSITE profilePS512139.9697696IPR005539ELK domain
SMARTSM011886.1E-47697IPR005539ELK domain
PROSITE profilePS5007111.72696159IPR001356Homeobox domain
SuperFamilySSF466891.11E-1698162IPR009057Homeodomain-like
SMARTSM003894.7E-1198163IPR001356Homeobox domain
CDDcd000865.69E-1299160No hitNo description
Gene3DG3DSA:1.10.10.601.0E-25103160IPR009057Homeodomain-like
PfamPF059203.4E-18116155IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDDEEQVDS DANLFDGSMD GHDSMGFGPL  60
IPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SVLKAWWQSH  120
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSTVLKSK RKSNAGENSS  180
DRFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1399163872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10994.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4137780.0HQ413778.1 Fragaria vesca knotted-like homeobox KNOX5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458838.11e-133PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-118KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLF6H3V21e-125F6H3V2_VITVI; Uncharacterized protein
STRINGVIT_04s0008g06130.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-120KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]