PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10972.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 635aa    MW: 72387.2 Da    PI: 7.4546
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10972.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.3e-2050135290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                               Y eY+ ++GFs+ +++++k   n+ + + +++Cskeg++ +++ + e++++ r  trtgC  k++  +++++ w+vt +++eHnH
  mrna10972.1-v1.0-hybrid  50 LYFEYGVRIGFSIWIDQKRKI--NNVVRQVNYCCSKEGFKLDSDPS-EENQTYRLDTRTGCPTKIRFGLQDNNLWKVTFFVSEHNH 132
                              799*************98887..999****************9999.9999*********************************** PP

                     FAR1  88 ela 90 
                               la
  mrna10972.1-v1.0-hybrid 133 RLA 135
                              *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.5E-1750135IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.186339375IPR007527Zinc finger, SWIM-type
PfamPF044349.0E-6341374IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-4350377IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MLTVIQIEDD DEDSRISDLD GHPMVVNRQD NTEENLYGVI VNSEEEAYDL YFEYGVRIGF  60
SIWIDQKRKI NNVVRQVNYC CSKEGFKLDS DPSEENQTYR LDTRTGCPTK IRFGLQDNNL  120
WKVTFFVSEH NHRLATPEER QFLRCNRKVA EAHKGNLNCI HNPEFSELFK KFLFGRVTEY  180
EFESTWTEIT EKFDLTEKES TWLQTLYDIR EKWCALFSKD TFSADILSTQ RSESTDNVFT  240
NMSTKTMSLT EFVDQYDKQA EQMRSSELEE TFRCNNGIPS RAAKSSGIKK QAGMVYTRKI  300
YNLFEFEFIA SLAVKMEEVG NDGTLQKFEL NEEGHKRVYI VQFNSSNMTI CCICQMYESK  360
GWLCRHALRV LNVKNVTQIP AQYILKRCTK DAKKGVEENN VELQVKEKST VTLRRNSLMR  420
KAYGSSVNTS NAGGNKNETL FDEPPILNPV GVWPKGMTNK RMKAAMEKKQ NKKAPKGRGS  480
GKIKPPNNGA PSRASLPVVH NSDLLHQFGA SSGTYPINQQ FSAMSFPTTN VYAPYTLYNQ  540
NPTFVSPSSQ HNLTYANMHQ ADIYFTQLNQ NSTPRIATNL ISQIPQQSQR AEEYSAEYSG  600
STRILISGGG LGERRGRGGR AGEVRESDWA TESD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10972.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024171776.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251QFY51e-119A0A251QFY5_PRUPE; Uncharacterized protein
STRINGXP_004292735.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-36FAR1-related sequence 5