PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10914.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family Nin-like
Protein Properties Length: 908aa    MW: 100919 Da    PI: 6.3071
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10914.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.92.3e-29588639152
                   RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                              aek i+le+l+kyFs+++kdAAk+Lgvc T+LKriCRq+GIkRWP+Rkik++
  mrna10914.1-v1.0-hybrid 588 AEKAITLEVLRKYFSGSLKDAAKSLGVCSTTLKRICRQHGIKRWPSRKIKKV 639
                              5899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.371578659IPR003035RWP-RK domain
PfamPF020423.5E-26592639IPR003035RWP-RK domain
SuperFamilySSF542773.19E-23806894No hitNo description
Gene3DG3DSA:3.10.20.2401.0E-22810890No hitNo description
SMARTSM006661.8E-23810893IPR000270PB1 domain
PROSITE profilePS5174527.639810893IPR000270PB1 domain
PfamPF005642.1E-19811891IPR000270PB1 domain
CDDcd064071.49E-40812891No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MEDGVLSPAT MMGAPADSTM DLDFMDELFL DGCWLETTEG PGFPNQSPLS SGAIMDSSFF  60
WPTSGTNGNF GMNPFQISNQ AQTPLFNELQ EEAPASMQSP NQNMTDVVGF SGQSENPIIQ  120
GHEFSRGIWI GPIENRISAP SVMERLKRAL VYMKDVMRDK NVLVQVWLPV NRGGRRVLTT  180
NDLLSSLDSS CPRLAKYHDI SVNYQFSTGE DSKELVKGLP GRVFSAKVPE WTPDVRFFRN  240
DEYPRVDDAQ RYDVRGTLAL PIFEQGSRTC LGVIEVVTTT QKVQYQPELE SVCKALEAVD  300
LRSSENLNTH NIKVNGKPYQ AVLPEIREVL RSACETHNLP LAQTWVSCIQ QAKDGCRHSD  360
DNYVHCVSTV DQACHVTDPH IRGFHEACSE HHLLKGQGIV GRAFMTNQPC FSNDITSLAK  420
TEYPLSHHAR MFGLHAAVAI RLRSIDTGST DFVLEFFLPV DCRDPEEHKK MLTSLSLIIQ  480
NICRSLRVVT DKELEEEIDL PVSEVIVPSD PRPSGIASFA EVQQTDNDVS IFPKEKARKM  540
PSAKSSKLMP QDLNVKGVDC VGEFSTIVEG SFSSVGASKT GEKRRTKAEK AITLEVLRKY  600
FSGSLKDAAK SLGVCSTTLK RICRQHGIKR WPSRKIKKVG HSLEKLQRVI DSVQGASSAF  660
QINSFYTNYP ELASPNLSGT SPFSTSKLID RPRPSDVPPD GGVLSPQATA SKSPSSSCSQ  720
STSSSQCCSS KTEQHLPTWS VAGNDDPIVG DNRMLKRVRS EAELDALRQD GVDELMQRSQ  780
SHKNLSEQQK LQSFQPSLKY DGQIAQEGDA RKVKVTYGDE KTRFRIQNNW KYEDLGQEIA  840
KRFGINDMCR FDIKYLDDDS EWVLLTCDAD LEECLDVCRS SRCSTIKLSL QLSRRQLERF  900
SGSSGPA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10914.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465573.10.0PREDICTED: protein NLP5-like isoform X2
SwissprotQ9SFW80.0NLP5_ARATH; Protein NLP5
TrEMBLA0A2P6PBG70.0A0A2P6PBG7_ROSCH; Putative transcription factor Nin-like family
STRINGXP_004301980.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein