PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10901.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 511aa MW: 58440.9 Da PI: 6.5106 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 152 | 2.8e-47 | 103 | 228 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 ppG+rF+P+deelv +yL+kk+ +++l+ + i ev++y+++P++L k+++ +ekewyfF++rd+ky++gkr+nr++++gyWkat mrna10901.1-v1.0-hybrid 103 PPGYRFNPRDEELVRYYLQKKIMDEPLPP-NKIMEVNLYRHNPETLAGKYDTyGEKEWYFFTPRDRKYRNGKRPNRKASDGYWKAT 187 9*************************999.77**************9544443889****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk+++s ++ +vg +k Lvfy+g+ pkg+kt+W+mheyr+ mrna10901.1-v1.0-hybrid 188 GADKSIKS-GNVEVGFRKALVFYNGKPPKGKKTNWIMHEYRV 228 ********.999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.42E-57 | 100 | 254 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.228 | 102 | 254 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-26 | 103 | 228 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MSSPSKSPTM EPPPVQQSHP HPKASNSVTE ATATCGSPSH KPLQQLPHEA AARTRIHHHV 60 ANNGASSSAA QEADHRFSDE EEELNNFNNN QKKQQDAFLS SFPPGYRFNP RDEELVRYYL 120 QKKIMDEPLP PNKIMEVNLY RHNPETLAGK YDTYGEKEWY FFTPRDRKYR NGKRPNRKAS 180 DGYWKATGAD KSIKSGNVEV GFRKALVFYN GKPPKGKKTN WIMHEYRVPD SRTVKRTEND 240 MRLDNWVLCR IYKKADNKNK IQEADLAEEN ISMSILDDTE MEMNGQVDNT QATKSKEEYP 300 HTIAHPPLEF DRAYSNFAYH YTSYPDQPMI DALSNNMRHH LIQPVAFDSK DSYGNMYHSL 360 PTRGSSSAMQ SLDENCIVPF SEHKHGCSVH LIDMTSESVV CKEEGSDQKY GVQFPGQKYV 420 VQSPEQEKTH CYGKSVQPSD AVDSRHNPST PCLDQKSIQQ EIGKSLLSPP SDDLPYCIQE 480 PDDEHDNILF SDSYFRYSEV FPWVFRLVIE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-52 | 101 | 260 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-52 | 101 | 260 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-52 | 101 | 260 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-52 | 101 | 260 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-52 | 101 | 260 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-52 | 101 | 260 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-52 | 101 | 260 | 16 | 171 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10901.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301513.2 | 0.0 | PREDICTED: NAC domain-containing protein 19-like | ||||
TrEMBL | A0A2P6QFQ6 | 0.0 | A0A2P6QFQ6_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004301513.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-63 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | mrna10901.1-v1.0-hybrid |