PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10901.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 511aa    MW: 58440.9 Da    PI: 6.5106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10901.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1522.8e-471032282128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                              ppG+rF+P+deelv +yL+kk+ +++l+  + i ev++y+++P++L  k+++ +ekewyfF++rd+ky++gkr+nr++++gyWkat
  mrna10901.1-v1.0-hybrid 103 PPGYRFNPRDEELVRYYLQKKIMDEPLPP-NKIMEVNLYRHNPETLAGKYDTyGEKEWYFFTPRDRKYRNGKRPNRKASDGYWKAT 187
                              9*************************999.77**************9544443889****************************** PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+++s ++ +vg +k Lvfy+g+ pkg+kt+W+mheyr+
  mrna10901.1-v1.0-hybrid 188 GADKSIKS-GNVEVGFRKALVFYNGKPPKGKKTNWIMHEYRV 228
                              ********.999****************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-57100254IPR003441NAC domain
PROSITE profilePS5100555.228102254IPR003441NAC domain
PfamPF023651.6E-26103228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MSSPSKSPTM EPPPVQQSHP HPKASNSVTE ATATCGSPSH KPLQQLPHEA AARTRIHHHV  60
ANNGASSSAA QEADHRFSDE EEELNNFNNN QKKQQDAFLS SFPPGYRFNP RDEELVRYYL  120
QKKIMDEPLP PNKIMEVNLY RHNPETLAGK YDTYGEKEWY FFTPRDRKYR NGKRPNRKAS  180
DGYWKATGAD KSIKSGNVEV GFRKALVFYN GKPPKGKKTN WIMHEYRVPD SRTVKRTEND  240
MRLDNWVLCR IYKKADNKNK IQEADLAEEN ISMSILDDTE MEMNGQVDNT QATKSKEEYP  300
HTIAHPPLEF DRAYSNFAYH YTSYPDQPMI DALSNNMRHH LIQPVAFDSK DSYGNMYHSL  360
PTRGSSSAMQ SLDENCIVPF SEHKHGCSVH LIDMTSESVV CKEEGSDQKY GVQFPGQKYV  420
VQSPEQEKTH CYGKSVQPSD AVDSRHNPST PCLDQKSIQQ EIGKSLLSPP SDDLPYCIQE  480
PDDEHDNILF SDSYFRYSEV FPWVFRLVIE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-5210126016171NO APICAL MERISTEM PROTEIN
1ut4_B4e-5210126016171NO APICAL MERISTEM PROTEIN
1ut7_A4e-5210126016171NO APICAL MERISTEM PROTEIN
1ut7_B4e-5210126016171NO APICAL MERISTEM PROTEIN
3swm_A5e-5210126019174NAC domain-containing protein 19
3swm_B5e-5210126019174NAC domain-containing protein 19
3swm_C5e-5210126019174NAC domain-containing protein 19
3swm_D5e-5210126019174NAC domain-containing protein 19
3swp_A5e-5210126019174NAC domain-containing protein 19
3swp_B5e-5210126019174NAC domain-containing protein 19
3swp_C5e-5210126019174NAC domain-containing protein 19
3swp_D5e-5210126019174NAC domain-containing protein 19
4dul_A4e-5210126016171NAC domain-containing protein 19
4dul_B4e-5210126016171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10901.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301513.20.0PREDICTED: NAC domain-containing protein 19-like
TrEMBLA0A2P6QFQ60.0A0A2P6QFQ6_ROSCH; Putative transcription factor NAM family
STRINGXP_004301513.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101121642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-63NAC-like, activated by AP3/PI