PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10891.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | CAMTA | ||||||||
Protein Properties | Length: 608aa MW: 69631.7 Da PI: 7.9812 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 148.4 | 1.8e-46 | 26 | 157 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg.......... 77 +e k rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkk+kdgktv+E he+LK +g mrna10891.1-v1.0-hybrid 26 EEaKGRWLRPKEIHALLYNYKYFTIHVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKRKDGKTVKESHEHLKADGlptcgmefgt 111 45499********************************************************************************* PP CG-1 78 .....vevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 e + +yYah+e+ p f rrcywlL+++le+ivlvhy+e++ mrna10891.1-v1.0-hybrid 112 lmvgdEERIDVYYAHGEDSPIFVRRCYWLLDKTLEDIVLVHYRETQ 157 *******************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 68.39 | 21 | 162 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.1E-62 | 24 | 157 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.1E-37 | 27 | 155 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.210.10 | 1.4E-19 | 217 | 354 | IPR008974 | TRAF-like |
SuperFamily | SSF49599 | 8.18E-32 | 225 | 357 | IPR008974 | TRAF-like |
PROSITE profile | PS50144 | 27.985 | 227 | 352 | IPR002083 | MATH/TRAF domain |
CDD | cd00121 | 1.02E-29 | 229 | 352 | No hit | No description |
SMART | SM00061 | 2.2E-9 | 229 | 333 | IPR002083 | MATH/TRAF domain |
Pfam | PF00917 | 7.2E-13 | 234 | 353 | IPR002083 | MATH/TRAF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence Send to blast |
MDKPLVGSEI HGFHTMQDLD VDTIMEEAKG RWLRPKEIHA LLYNYKYFTI HVKPVNLPPS 60 GTIVLFDRKM LRNFRKDGHN WKKRKDGKTV KESHEHLKAD GLPTCGMEFG TLMVGDEERI 120 DVYYAHGEDS PIFVRRCYWL LDKTLEDIVL VHYRETQEAV AGAALHAVEK DECSVAPLGS 180 VAASKMKHGK ADKLNQGNAR LKNLRVRKLI QKARIMRKRK VEEDHETVTF TWRINSFSKL 240 YTFKHYSEIF SIGDFKWRIL MYPKGNKEDH LSVYLDISST TAFPLGWSKY AKFSLTLVNQ 300 LWRRKSITKE IHVFKDCEMD YCGFKSLVPL SQFYDYGNGY IVNDICIIEA KVAVRKDDAK 360 ILQDHGISAC MEPLEKEKEG QGPSNAQPVN VPDISAQLET PCCEQVPASY HSAPISEQIG 420 TDLPNISIPK GIKDVLSTSA DELMDFRGLA KIEKACVPLL DEVCSCHSSL IKCQMKRSPK 480 FKEWAFTALG RVLHFLKTKM VKDMTDDVCA ELECLWEELQ AFKFDLAWLK PYVERALCVN 540 KLVKREVQSL RKGVDELEIE KKRLMAKLEV ARRELEKVEG VEKMDMDKVL GYGGWPFCGI 600 LNFENCP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10891.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301509.1 | 0.0 | PREDICTED: MATH domain and coiled-coil domain-containing protein At3g58270-like | ||||
TrEMBL | A0A2P6QCU8 | 0.0 | A0A2P6QCU8_ROSCH; Putative ubiquitinyl hydrolase 1 | ||||
STRING | XP_004301509.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16940.1 | 3e-73 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | mrna10891.1-v1.0-hybrid |