PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10891.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CAMTA
Protein Properties Length: 608aa    MW: 69631.7 Da    PI: 7.9812
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10891.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1148.41.8e-46261573118
                     CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg.......... 77 
                              +e k rwl+++ei+a+L n++ ++++ ++ + p+sg+++L++rk++r+frkDG++wkk+kdgktv+E he+LK +g          
  mrna10891.1-v1.0-hybrid  26 EEaKGRWLRPKEIHALLYNYKYFTIHVKPVNLPPSGTIVLFDRKMLRNFRKDGHNWKKRKDGKTVKESHEHLKADGlptcgmefgt 111
                              45499********************************************************************************* PP

                     CG-1  78 .....vevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                                    e + +yYah+e+ p f rrcywlL+++le+ivlvhy+e++
  mrna10891.1-v1.0-hybrid 112 lmvgdEERIDVYYAHGEDSPIFVRRCYWLLDKTLEDIVLVHYRETQ 157
                              *******************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143768.3921162IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-6224157IPR005559CG-1 DNA-binding domain
PfamPF038592.1E-3727155IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.210.101.4E-19217354IPR008974TRAF-like
SuperFamilySSF495998.18E-32225357IPR008974TRAF-like
PROSITE profilePS5014427.985227352IPR002083MATH/TRAF domain
CDDcd001211.02E-29229352No hitNo description
SMARTSM000612.2E-9229333IPR002083MATH/TRAF domain
PfamPF009177.2E-13234353IPR002083MATH/TRAF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDKPLVGSEI HGFHTMQDLD VDTIMEEAKG RWLRPKEIHA LLYNYKYFTI HVKPVNLPPS  60
GTIVLFDRKM LRNFRKDGHN WKKRKDGKTV KESHEHLKAD GLPTCGMEFG TLMVGDEERI  120
DVYYAHGEDS PIFVRRCYWL LDKTLEDIVL VHYRETQEAV AGAALHAVEK DECSVAPLGS  180
VAASKMKHGK ADKLNQGNAR LKNLRVRKLI QKARIMRKRK VEEDHETVTF TWRINSFSKL  240
YTFKHYSEIF SIGDFKWRIL MYPKGNKEDH LSVYLDISST TAFPLGWSKY AKFSLTLVNQ  300
LWRRKSITKE IHVFKDCEMD YCGFKSLVPL SQFYDYGNGY IVNDICIIEA KVAVRKDDAK  360
ILQDHGISAC MEPLEKEKEG QGPSNAQPVN VPDISAQLET PCCEQVPASY HSAPISEQIG  420
TDLPNISIPK GIKDVLSTSA DELMDFRGLA KIEKACVPLL DEVCSCHSSL IKCQMKRSPK  480
FKEWAFTALG RVLHFLKTKM VKDMTDDVCA ELECLWEELQ AFKFDLAWLK PYVERALCVN  540
KLVKREVQSL RKGVDELEIE KKRLMAKLEV ARRELEKVEG VEKMDMDKVL GYGGWPFCGI  600
LNFENCP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10891.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301509.10.0PREDICTED: MATH domain and coiled-coil domain-containing protein At3g58270-like
TrEMBLA0A2P6QCU80.0A0A2P6QCU8_ROSCH; Putative ubiquitinyl hydrolase 1
STRINGXP_004301509.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16940.13e-73calmodulin binding;transcription regulators