PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10845.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 349aa    MW: 38766.6 Da    PI: 5.3169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10845.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19192242255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ a eAaka+++a+ kl+g
  mrna10845.1-v1.0-hybrid 192 HYRGVRQRP-WGKYAAEIRDP---NrRGSRVWLGTFDAAIEAAKAYDRAAFKLRG 242
                              8********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.53E-31191250No hitNo description
Gene3DG3DSA:3.30.730.101.6E-31191251IPR001471AP2/ERF domain
PfamPF008474.3E-13192242IPR001471AP2/ERF domain
PROSITE profilePS5103223.749192250IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-22192251IPR016177DNA-binding domain
SMARTSM003804.0E-35192256IPR001471AP2/ERF domain
PRINTSPR003671.4E-13193204IPR001471AP2/ERF domain
PRINTSPR003671.4E-13232252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEPALDMAAL DFIKNHLLGE FSPICKSSGC SVVTELTTTT TTSSSSSSSS SSSDISRSQS  60
TSQSSIEISD YFDNELFDFT SNNIPIPDDF FEFETKPQVI DLTTPKPTDL TSQISFEFDS  120
KPQFNSSASF FEFQPEVQIL NQTAPKPVTT SARKPALTIS LPNKTEWIQF SNSDKSQLVV  180
QKTVQNEEKK KHYRGVRQRP WGKYAAEIRD PNRRGSRVWL GTFDAAIEAA KAYDRAAFKL  240
RGSKAILNFP LEAGKYDTPQ PNKTAAVVER KRRREEEVQP EVPVVVKKEK VTVSEEAVSY  300
IKDMPLTPSS WTAALWDSDE DVKGIFSVPP LSPLSPHPAM GFSQLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30189251264ATERF1
3gcc_A3e-30189251264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269273RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10845.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2117144e-61KM211714.1 Prunus pseudocerasus EREBP-like factor (ERF1) mRNA, complete cds.
GenBankKT3695394e-61KT369539.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300355.10.0PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803416e-72EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A3Q8TD770.0A0A3Q8TD77_FRAAN; Transcription factor ERF75
STRINGXP_004300355.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-61ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]