PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10834.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 255aa    MW: 28808.6 Da    PI: 8.1124
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10834.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.53.8e-0952881253
                      AP2 12 rgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                              g+W A+I        +kr+slg++ t+ eAa a+++a++k+
  mrna10834.1-v1.0-hybrid 52 GGKWGARISYN-----YKRYSLGTHETEIEAAIAYDRAALKI 88
                             69*****7762.....5**********99**********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-114297IPR016177DNA-binding domain
CDDcd000188.17E-134396No hitNo description
PROSITE profilePS5103211.65443102IPR001471AP2/ERF domain
SMARTSM003809.4E-543103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-95198IPR001471AP2/ERF domain
PfamPF008472.0E-45288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSIDLSSDST IEMVVQDRNL PVTSPSHQNR RAGRSQQGSS SSKLKGLVPL KGGKWGARIS  60
YNYKRYSLGT HETEIEAAIA YDRAALKIPR AHSLNFHRSN YTIEESTFQS QHSIEDILSM  120
LHDKTYTFML RNFIFQYSSS VNYHAEIFMK EQGIVYECVL QKELTLMDVT HKCFLVQGDY  180
ASLHFPTKEH ECLNSTATLW DIHGLSWTKF YLINVLKTAG ESSVGGSLNK ELEANRSEEE  240
KKRGVKLFGV QISG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10834.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465247.11e-118PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
TrEMBLA0A3Q8TB281e-166A0A3Q8TB28_FRAAN; Transcription factor RAV1
STRINGXP_004301744.11e-155(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16118910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-13RAV family protein