PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10828.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 407aa    MW: 46172.2 Da    PI: 6.6255
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10828.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-1522961697
                             EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                       B3 16 lvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                             l lp  f+ ++    +++++    +  +++gr+W+v +  +k   +++++ GW++Fv++ngLk g+++vF++ g+s+f  +v +f
  mrna10828.1-v1.0-hybrid 22 LKLPSAFL-QClngRLPPQC----S-LQTQGRTWNVSV--EKVNHKFYFQLGWNGFVQDNGLKCGEILVFHYAGNSQF--HVEIF 96
                             77788887.45454444444....3.3469********..999999****************************9*99..99988 PP
2B351.12.4e-16312402599
                              -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                               ++ ++ + + l +p++fa+eh  ++++ +   ++l+  + r W+vk+  +  + ++ l++GW++Fv++n+Lk g ++vF l++  
  mrna10828.1-v1.0-hybrid 312 SMSISYASGKFLNVPRSFAAEHltNLQP-G--HIILK-VNKRFWSVKV--NYLGTTTKLQAGWSKFVHDNNLKFGYVCVFVLTNAI 391
                              45556666677***********865554.3..35544.588*******..55555577************************999* PP

                              EE..EEEEE-S CS
                       B3  89 efelvvkvfrk 99 
                              efe+vv +fr 
  mrna10828.1-v1.0-hybrid 392 EFEYVVEIFRV 402
                              *********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.76199IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-206101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-216100IPR015300DNA-binding pseudobarrel domain
CDDcd100171.93E-13796No hitNo description
SMARTSM010191.1E-7999IPR003340B3 DNA binding domain
PfamPF023621.4E-122296IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-19302401IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-19302401IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-17307401No hitNo description
PROSITE profilePS5086311.899308403IPR003340B3 DNA binding domain
SMARTSM010193.7E-12309403IPR003340B3 DNA binding domain
PfamPF023626.0E-14310402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MATKINPSFI KALQGDQFSV KLKLPSAFLQ CLNGRLPPQC SLQTQGRTWN VSVEKVNHKF  60
YFQLGWNGFV QDNGLKCGEI LVFHYAGNSQ FHVEIFGINT CKKLHVMPEM EEANEHDVSP  120
EILDDLPPCP RKAEEKSFLS SPLPHKRSKA SSSGKADITL NFLKRLPRLE KSAMKKKDSH  180
RSESKMISIF DNDSGDEDHH DEKEYEDDDH DEECDAENED DEEEATEDQE KEEDDDSIET  240
LSDSPGCSRT VRKYTLASSL HQRKRKRYTV KAKTKIKAVG VLSSEEKILK AIAIQRACTF  300
KFNSDNPCFV ISMSISYASG KFLNVPRSFA AEHLTNLQPG HIILKVNKRF WSVKVNYLGT  360
TTKLQAGWSK FVHDNNLKFG YVCVFVLTNA IEFEYVVEIF RVTDAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10828.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465809.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2P6RMW01e-174A0A2P6RMW0_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301742.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2625423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.16e-15B3 family protein