PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10712.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LSD | ||||||||
Protein Properties | Length: 158aa MW: 16365.2 Da PI: 8.2043 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.1 | 1.4e-13 | 40 | 64 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V mrna10712.1-v1.0-hybrid 40 CSGCRNLLLYPVGATSVCCAVCNAV 64 ************************9 PP | |||||||
2 | zf-LSD1 | 46.6 | 5.5e-15 | 79 | 103 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV mrna10712.1-v1.0-hybrid 79 CGGCHTLLMYIRGATSVQCSCCHTV 103 ************************9 PP | |||||||
3 | zf-LSD1 | 41.7 | 1.9e-13 | 117 | 141 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V mrna10712.1-v1.0-hybrid 117 CGNCRMLLMYQYGARSVKCAVCNFV 141 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 3.8E-4 | 31 | 138 | No hit | No description |
SuperFamily | SSF48695 | 1.53E-5 | 37 | 138 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 1.1E-12 | 37 | 67 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-10 | 40 | 64 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.0E-14 | 76 | 105 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-12 | 79 | 103 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.5E-12 | 114 | 144 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-12 | 117 | 141 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MHLKAKNIMP VPLAPYPTPP APYTPPAAAA ANGAQSQLVC SGCRNLLLYP VGATSVCCAV 60 CNAVTAVPPP GTEMAQLVCG GCHTLLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC 120 RMLLMYQYGA RSVKCAVCNF VTSVGVSTST PEQKFTN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10712.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300252.1 | 1e-110 | PREDICTED: protein LOL1 | ||||
Swissprot | Q93ZB1 | 2e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2P5C7N2 | 1e-92 | A0A2P5C7N2_PARAD; Zinc finger, LSD1-type | ||||
STRING | XP_004300252.1 | 1e-109 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-67 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna10712.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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