PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna10669.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 879aa MW: 101261 Da PI: 8.1799

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna10669.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	55	126	23	88
FAR1 23 krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 + +++ + t+ C k+gk +++ ++ ++k rr++ +++ +C +l+ kk ++we+t +e +HnHe mrna10669.1-v1.0-hybrid 55 RSDKKKPRVTLGCEKSGKYDTRYTRekpmtDKKGRRNTGTKKSDCPFRLTGKKLPaGDEWELTVVEGKHNHE 126 356667899*******999888888998899999************99999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-5	40	126	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50802	8.613	665	806	IPR003323	OTU domain

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence Send to blast
MDHVATSTPS DVENEYTRDK TSQFTTTQTF ESKEELIKWA KEVGRSNDIT VVVLRSDKKK 60 PRVTLGCEKS GKYDTRYTRE KPMTDKKGRR NTGTKKSDCP FRLTGKKLPA GDEWELTVVE 120 GKHNHEAKDT IRKQGHSFQG RLSQEEKSLV KDWRETGKQP KEILEDLKKR DTHNKSTART 180 ILNECQRLER LEDKRCQLQQ LASRPEKHNF IEKHRRTSPK MDTASDLFLT HRISLELLLA 240 FPTVLEIHWQ ERPPSSTRFI ILGITSTDTI FFVAFAITSR DGSSYEWALS SLRGVMNGYG 300 IAMPDVVILE TWADTIQLAP MKKVVNDVFS TAKVLLSMAI VRDWLHAIIY GPLDDYYSPY 360 TLVIPKLNYE ERISFRKKWK LLVESPTEAD LEQRIMQLRT EFCKYPKILD YVTDTLLEPY 420 KEMFVAAWTD KVMHLGWSQG TWGCRYSFNL ASILSNRLAG VEQKVPTDKF WKDLQGWIEN 480 DNVNVKQSLK SENYDGYGFP ELKGLYGTVS RRALTLLREQ TDVARRRDVD NGENCRCAIR 540 STHGLPCAHQ IAKYRREGRP IPPECINSHW RTLQLKPLRE TGEPSVEGRV KRRKLSDKKN 600 TDTHFVLPLP DDIVESERNS PNAGPSIVPS TQDRQPDDEV SDIQSTNKLL ELVNVSPLVL 660 RPYVLDVKDV PRDGHCGFST IASLLGITDE DGRPGWVKVR EDLRKELKFH RDHYAHLFGS 720 KHEVDDLLHR LDYSLIPCPE KEHWMIMPEM GHIIASCYGV VLILLSSVQN QCFTFFPLQT 780 APTFVSLPAE IAIGFCDEHF VQVLFKENHR YPHPMPPPAA LLTKREPSDF DRHQQQRSRE 840 WATRYDARMK QFSSYLQPMV VSHENPIVLD TVSSMDIF*

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence Send to blast

MDHVATSTPS DVENEYTRDK TSQFTTTQTF ESKEELIKWA KEVGRSNDIT VVVLRSDKKK  60
PRVTLGCEKS GKYDTRYTRE KPMTDKKGRR NTGTKKSDCP FRLTGKKLPA GDEWELTVVE  120
GKHNHEAKDT IRKQGHSFQG RLSQEEKSLV KDWRETGKQP KEILEDLKKR DTHNKSTART  180
ILNECQRLER LEDKRCQLQQ LASRPEKHNF IEKHRRTSPK MDTASDLFLT HRISLELLLA  240
FPTVLEIHWQ ERPPSSTRFI ILGITSTDTI FFVAFAITSR DGSSYEWALS SLRGVMNGYG  300
IAMPDVVILE TWADTIQLAP MKKVVNDVFS TAKVLLSMAI VRDWLHAIIY GPLDDYYSPY  360
TLVIPKLNYE ERISFRKKWK LLVESPTEAD LEQRIMQLRT EFCKYPKILD YVTDTLLEPY  420
KEMFVAAWTD KVMHLGWSQG TWGCRYSFNL ASILSNRLAG VEQKVPTDKF WKDLQGWIEN  480
DNVNVKQSLK SENYDGYGFP ELKGLYGTVS RRALTLLREQ TDVARRRDVD NGENCRCAIR  540
STHGLPCAHQ IAKYRREGRP IPPECINSHW RTLQLKPLRE TGEPSVEGRV KRRKLSDKKN  600
TDTHFVLPLP DDIVESERNS PNAGPSIVPS TQDRQPDDEV SDIQSTNKLL ELVNVSPLVL  660
RPYVLDVKDV PRDGHCGFST IASLLGITDE DGRPGWVKVR EDLRKELKFH RDHYAHLFGS  720
KHEVDDLLHR LDYSLIPCPE KEHWMIMPEM GHIIASCYGV VLILLSSVQN QCFTFFPLQT  780
APTFVSLPAE IAIGFCDEHF VQVLFKENHR YPHPMPPPAA LLTKREPSDF DRHQQQRSRE  840
WATRYDARMK QFSSYLQPMV VSHENPIVLD TVSSMDIF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna10669.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004300313.1	0.0	PREDICTED: uncharacterized protein LOC101306139
STRING	XP_004300313.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22

Link Out ? help Back to Top
Phytozome	mrna10669.1-v1.0-hybrid