PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10539.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 338aa    MW: 38381.2 Da    PI: 5.4316
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10539.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.4e-10761532196
                              HH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  21 kfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              k ae++        +e+++l+++d +s ++W +k++y  ++ks++yvl+ +  +Fv++ g+++gD++ ++  ++++++l+++ 
  mrna10539.1-v1.0-hybrid  76 KEAEKYlpslF--DKEGIKLRIRDaLSTQEWGLKYKYwtNNKSRMYVLE-NIGDFVQESGVEVGDSIHLY--EDECKNLLISC 153
                              55666666432..346789*****9999*******99888888889999.*******************9..66888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1075155IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1275152IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSSSHLSLSS PKFDCDGLED GTPKKKRHSE NKKSYLCRAC CSSSSRLAVE RDPSTAGSET  60
QNEQHLYPFC MPDNKKEAEK YLPSLFDKEG IKLRIRDALS TQEWGLKYKY WTNNKSRMYV  120
LENIGDFVQE SGVEVGDSIH LYEDECKNLL ISCHARNQYV SIHRHRARPV HVVEPSSTSY  180
HQQNYTDTNT NTNTTIDNSN TKISANATSI YTPYAYNENR TDKDETSSTI VLQQQLKREE  240
QLEETNNTVT LFTDPAPSYI KSEEVNNSNK YVTRQQQTST HQLAMAEIFG SSSSSSPSTV  300
KMSDDNLGDC YEGLGTLSEV HRFEFDFDDI MRDDKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A3e-277515532112B3 domain-containing transcription factor LEC2
6j9c_D3e-277515532112B3 domain-containing transcription factor LEC2
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10539.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024200332.17e-55B3 domain-containing transcription factor LEC2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123482127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-27B3 family protein