PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10525.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 312aa    MW: 34255 Da    PI: 7.5091
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10525.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33e-07252294343
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                              +W + Ed  l++a k ++++   +W++Ia+ ++ g+t   c+ r
  mrna10525.1-v1.0-hybrid 252 SWGASEDIALLNALKAFPKEvpmRWEKIAAAVP-GKTKAACVKR 294
                              7********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.48154207IPR001005SANT/Myb domain
PROSITE profilePS500904.693158191IPR017877Myb-like domain
SMARTSM007171.1E-5249301IPR001005SANT/Myb domain
SuperFamilySSF466896.79E-9250298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-4251294IPR009057Homeodomain-like
PfamPF002497.1E-6252294IPR001005SANT/Myb domain
CDDcd001672.91E-5252294No hitNo description
PROSITE profilePS500906.365252294IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEFLDEDARP RFLFQSKAVT SSATETEPHY KNLSKPWIAF TVLVSLVLLG LAFFFLQSEP  60
YQSLLIWVAL SILVGPFAPP SVTGGDVRVG HGPVVDFPEV PAEVEDEAKR RRQKPRRFED  120
PGVDLAGNGN GYVREERKVE ALGGGGNGVR VLEEERDWVE EDVEVLKKQL VKNPVGKPRR  180
WEVIAEAFGG RYKVESVIKK AKELGEKKVS DSDSYAEFLR KRKPNEKKME SGSEEVGEEG  240
NAEGKSAGGG VSWGASEDIA LLNALKAFPK EVPMRWEKIA AAVPGKTKAA CVKRVAELKK  300
GFRSAKAATD E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223LRKRKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10525.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300281.10.0PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ22e-77MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2P6P9N70.0A0A2P6P9N7_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004300281.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.16e-67MYB_related family protein