PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10484.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | G2-like | ||||||||
Protein Properties | Length: 594aa MW: 65831.9 Da PI: 5.8984 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87 | 1.8e-27 | 323 | 377 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++ mrna10484.1-v1.0-hybrid 323 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKAEGLTRHNVASHLQKYRMH 377 5689*****************.********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.35E-6 | 47 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 5.7E-6 | 47 | 120 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 5.7E-6 | 178 | 187 | No hit | No description |
PROSITE profile | PS51294 | 14.406 | 320 | 379 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 321 | 379 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-17 | 322 | 380 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.6E-24 | 323 | 378 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-8 | 326 | 375 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MESTAANLID DIHRLQQQAD SDGLRNDATS AMVCTASDLE GWKDFPKGLR VLLLDEDTGY 60 SAEIRSKLEA MDYIVTTFRN ETEALSAFSN NPESFHVAII EVNTSKGDWG FKFLDTAKDM 120 PIIIEFLRKP LCEEKLRNIW QHVVHKAFNA GGKAVSESIK SIKESVLPTL QPKLENEPPK 180 CKISVVTENA ARVPEHDHEQ STGNDKYPAP STPQIKQGSR LLDDGDCQEQ TNSSEKESGE 240 HDGESKSVET TCGNADDTLQ ISEPQMPEKI VVKQENDSAD ASKLENNLSQ PHIRDCTNDT 300 GCATENLSKA SGLNHSYKSS RKKMKVDWTP ELHKKFVHAV EQLGVDQAIP SRILELMKAE 360 GLTRHNVASH LQKYRMHKRH ILPKDEDRRL LHPTDPTQMS YYSHKPIMAF PPYHYNSAVS 420 MPGVYPMWGQ PASHPANIQM WGQPSYPPWQ ASENWHWKPS YQALHADAWG CPVMPQPLQG 480 GYSSYPQTAS GVHNPNVVDN GCSLPHNSSE LHPIASVVIN ANVADNGCSM AHDSSELNLA 540 EEIIDKVMKE AISKPWLPLP LGLKLPSTEG VLAELSRQGI CNIPPPIDGS NSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-16 | 328 | 377 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10484.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300274.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_011465179.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_011465180.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_011465181.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_011465182.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
TrEMBL | A0A2P6P9P6 | 0.0 | A0A2P6P9P6_ROSCH; Putative response regulator and transcription factor RR-A-type family | ||||
STRING | XP_004300274.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3566 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-132 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna10484.1-v1.0-hybrid |