PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10474.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 887aa    MW: 98481.5 Da    PI: 5.8416
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10474.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.91.9e-34201112102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+y++++d+++++l+sw++ +nsfvv +  efa+++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ F 
  mrna10474.1-v1.0-hybrid  20 FLSKTYDMVDDPSTDHLVSWTAANNSFVVRNDAEFARDLLPLYFKHNNFSSFVRQLNTYGFKKVHPDR---------WEFANEGFL 96 
                              9********************999*****************************************999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+k+ll++++r+k 
  mrna10474.1-v1.0-hybrid  97 RGQKHLLKTVNRRKP 111
                              ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-3713104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-3315109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.5E-5916109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
TIGRFAMsTIGR005369.0E-53555853IPR004556Modification methylase HemK
SuperFamilySSF533352.41E-41589826IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.4E-54650850IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138475.4E-7683744IPR025714Methyltransferase domain
CDDcd024401.15E-10683810No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006479Biological Processprotein methylation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008276Molecular Functionprotein methyltransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MEGIEDTAAM INTATSIPPF LSKTYDMVDD PSTDHLVSWT AANNSFVVRN DAEFARDLLP  60
LYFKHNNFSS FVRQLNTYGF KKVHPDRWEF ANEGFLRGQK HLLKTVNRRK PATVQIHQQP  120
AAVPAPRVKS SQVAPCVEVG NLGLGEEVER LKRDKNTLMQ ELISLRQEQQ ATDNQLQNVG  180
QRVQGMEQRQ QQMMSFLAKA MHSPGFLSQL VQHQNESNRR ITGGNKKRRL PRQEDETLVG  240
NFSSKTLDGQ IVKYQPSMNE AAKAMLRQIM KMNISPRREP SMSNPDTFLI DNAPSTVLNS  300
RNCSRNLGVT LSEVSPTSYM MAESGFPVTC QPIAAQVQPS PYVATDCVTA TQISEENIYN  360
LQEDTVLPEP TAMQGIVPLS TVEIPNANFM ASETVNTDYM DMSVMDRAMP TESEAFSPEI  420
TPDADVLEDG EPNLPGINDV FWDKFFDTDE IDTSSVVGVA KDQEIQSGKG NGWDKVQHAK  480
REKPGSLCKR MKLSLTPKLS TFLKPSSALP PTHLRRSISS SSLSLSPPPP QPTSPKPKTP  540
LFLRPPIHPA TASDLQQWHH WAKTLASSVG SSFADSDNGP DSTLLLRELK WLVDDAVHQE  600
KLENGEGNIR LRVSLEEMYL LWKQRIEERR PFQYVVGCQH WRELVLCVQE GVLIPRPETE  660
LVVDLVGEAV EGNEGLREGL WADLGTGSGA IAIGIARVLG SCGRVFATDL SPVAVSVARF  720
NVERYGLQDV VEVRQGSWFE PLKDVEGKLA GFVSNPPYIP SDNISGLQAE VGRHEPRVAL  780
DGGVDGMDDL LHLCRGAASM LRPGGFFALE TNGESQCKYL VDYMENEARG SFCNLSIIPD  840
FAGIHRFVTG FRVKRPNHLP PNLRDLPTSR KGVNIYLDNP HHLLPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-241510924129Heat shock factor protein 1
5d5v_B1e-241510924129Heat shock factor protein 1
5d5v_D1e-241510924129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10474.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294201.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_011460871.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-135HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A1B0VC550.0A0A1B0VC55_FRAVE; Heat shock factor A1b
STRINGXP_004294201.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-107heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]