PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10333.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 488aa    MW: 54779.6 Da    PI: 7.6091
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10333.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.22.1e-361162282132
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 
                              a+kkdrhski T++g RdRRvRls+++a++fFdLqd LGfdk+s t+eWLl+++k aik+l +++ +++  +         s    
  mrna10333.1-v1.0-hybrid 116 AVKKDRHSKIFTAQGFRDRRVRLSINVAREFFDLQDLLGFDKASTTLEWLLRKSKNAIKDLEKSKCKNS--F---------S---- 186
                              78**************************************************************43333..2.........1.... PP

                      TCP  88 gkaaksaakskksqksaasalnlak.esrakarararertrekmri 132
                               ++++s+     +++ +     + k ++rakarararertrekm+ 
  mrna10333.1-v1.0-hybrid 187 -SSSTSECDVVLEDNLD---KRMRKmKERAKARARARERTREKMCG 228
                              .1122222233333333...344444679***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-33117191IPR005333Transcription factor, TCP
PROSITE profilePS5136932.584118176IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.245208225IPR017888CYC/TB1, R domain
PfamPF053482.2E-33363477No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MHSSSNNNIS CSGILYPFPP YSFPFSSSSH NNHHPLLPQE NTTPGGIFGL HQDQFSLVNN  60
SFLPPGPEST MLNLGGDSSN AIVPSPGDYR QHYGYDINNI SHPYFVSKDV QVPVVAVKKD  120
RHSKIFTAQG FRDRRVRLSI NVAREFFDLQ DLLGFDKAST TLEWLLRKSK NAIKDLEKSK  180
CKNSFSSSST SECDVVLEDN LDKRMRKMKE RAKARARARE RTREKMCGIS KRSPQICSHL  240
RLFNDLEPAD MNQERGSTVL TEYHESVALK RKLKAPSGSN YPDRSLELNP QRMEVSSNCC  300
SHINIQFPSA ISPNWDINSG VFTCPSICAI TANMNLNSSE NEAEEESRME APKNIEHQIG  360
GIQNDTLRFG LNSVKSNLVG AHPVESAHQS TKKMQEEMDR RILTNTYGSA FPMRMDFERQ  420
MLSRFQRPTG AIPSSMLGLE SLTGDLDSFG FEDYMNDPRE SETVRPLDAH HAMEVRLGLS  480
KGPVAFY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10333.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467828.10.0PREDICTED: transcription factor CYCLOIDEA
TrEMBLA0A2P6SE011e-146A0A2P6SE01_ROSCH; Putative transcription factor TCP family
STRINGXP_004306027.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-26TCP family protein