PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10333.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 488aa MW: 54779.6 Da PI: 7.6091 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.2 | 2.1e-36 | 116 | 228 | 2 | 132 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 a+kkdrhski T++g RdRRvRls+++a++fFdLqd LGfdk+s t+eWLl+++k aik+l +++ +++ + s mrna10333.1-v1.0-hybrid 116 AVKKDRHSKIFTAQGFRDRRVRLSINVAREFFDLQDLLGFDKASTTLEWLLRKSKNAIKDLEKSKCKNS--F---------S---- 186 78**************************************************************43333..2.........1.... PP TCP 88 gkaaksaakskksqksaasalnlak.esrakarararertrekmri 132 ++++s+ +++ + + k ++rakarararertrekm+ mrna10333.1-v1.0-hybrid 187 -SSSTSECDVVLEDNLD---KRMRKmKERAKARARARERTREKMCG 228 .1122222233333333...344444679***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.2E-33 | 117 | 191 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.584 | 118 | 176 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.245 | 208 | 225 | IPR017888 | CYC/TB1, R domain |
Pfam | PF05348 | 2.2E-33 | 363 | 477 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MHSSSNNNIS CSGILYPFPP YSFPFSSSSH NNHHPLLPQE NTTPGGIFGL HQDQFSLVNN 60 SFLPPGPEST MLNLGGDSSN AIVPSPGDYR QHYGYDINNI SHPYFVSKDV QVPVVAVKKD 120 RHSKIFTAQG FRDRRVRLSI NVAREFFDLQ DLLGFDKAST TLEWLLRKSK NAIKDLEKSK 180 CKNSFSSSST SECDVVLEDN LDKRMRKMKE RAKARARARE RTREKMCGIS KRSPQICSHL 240 RLFNDLEPAD MNQERGSTVL TEYHESVALK RKLKAPSGSN YPDRSLELNP QRMEVSSNCC 300 SHINIQFPSA ISPNWDINSG VFTCPSICAI TANMNLNSSE NEAEEESRME APKNIEHQIG 360 GIQNDTLRFG LNSVKSNLVG AHPVESAHQS TKKMQEEMDR RILTNTYGSA FPMRMDFERQ 420 MLSRFQRPTG AIPSSMLGLE SLTGDLDSFG FEDYMNDPRE SETVRPLDAH HAMEVRLGLS 480 KGPVAFY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10333.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467828.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA | ||||
TrEMBL | A0A2P6SE01 | 1e-146 | A0A2P6SE01_ROSCH; Putative transcription factor TCP family | ||||
STRING | XP_004306027.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 5e-26 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna10333.1-v1.0-hybrid |