PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10329.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 340aa MW: 38450.6 Da PI: 9.5781 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++mg +R +k+c +rw +yl mrna10329.1-v1.0-hybrid 4 RQRWQPEEDALLRAYVKQYGPREWALVSQRMGqpINRDPKSCLERWKNYL 53 89********************************99************97 PP | |||||||
2 | Myb_DNA-binding | 36 | 1.6e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + mrna10329.1-v1.0-hybrid 59 KGSLSPEEQSLVIELQAKYGNK-WKKIAAELP-GRTPKRLGKWWEVF 103 57789*****************.*********.*****999999776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.493 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-14 | 3 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 4 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.4E-22 | 4 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-8 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 58 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.319 | 58 | 108 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.4E-10 | 59 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-16 | 61 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-6 | 63 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MKERQRWQPE EDALLRAYVK QYGPREWALV SQRMGQPINR DPKSCLERWK NYLRPGLKKG 60 SLSPEEQSLV IELQAKYGNK WKKIAAELPG RTPKRLGKWW EVFRDKQLKH LSKLHPSAAA 120 GTAASSSSST PPEGNIPISS PERAAQGPYD HILETFAEKY VQPKLYTLTV EPDPNISLGS 180 GLPPWMNPPS ATTSTSSSAT ASPSVSLSLS PSDPGHDPDP TRVGMIVQWC KEVEEGRQSW 240 VQHKKEATWR LSRLEQQLEA EKARKRREAV EEVEAKIRAL REEEAAFMGR IESECREQMS 300 VLQREAESKE AKLVEAWCSK HVRLAKLVDR IGSWPSFSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2k9n_A | 1e-15 | 10 | 110 | 7 | 104 | MYB24 |
2kdz_A | 1e-15 | 10 | 110 | 7 | 104 | MYB24 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10329.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304144.1 | 0.0 | PREDICTED: protein rough sheath 2 homolog | ||||
Swissprot | Q94IB1 | 1e-100 | RS2_ORYSJ; Protein rough sheath 2 homolog | ||||
TrEMBL | A0A2P6S380 | 1e-178 | A0A2P6S380_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004304144.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2597 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 4e-58 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna10329.1-v1.0-hybrid |