PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna10300.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 302aa MW: 32338.4 Da PI: 8.6348

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna10300.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.3	3.8e-31	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++ mrna10300.1-v1.0-hybrid 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIYGSVGLLW 89 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 ++++ql+q+++e +l +++ mrna10300.1-v1.0-hybrid 90 SGSWQLCQAAVENVLKGQP 108 *********99988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	3.7E-94	1	299	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	17.012	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-25	4	102	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGQPIT PITSEAAANG 120 HGPPLKAYDI RHVSKDENSA ASTDPQKAKT RYRFKRSAVK PKPNKTGSGS GVEDAAAARF 180 EAKPYWVGDE FNRSTSHDSS LSHQSEAANV DGDSKETESM VSSETAEASL LFRAEPESSP 240 RKRTAPVQES ELALELTLGL ESSSSRAPHV VPVKKRRVEA SGFCGGSSSG DGACKMELGL 300 A*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna10300.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004304129.1	0.0	PREDICTED: LOB domain-containing protein 41-like
Swissprot	Q9M886	1e-106	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2P6S354	0.0	A0A2P6S354_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004304129.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-93	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	mrna10300.1-v1.0-hybrid