PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10203.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 169aa MW: 18865.6 Da PI: 8.4659 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.8 | 0.00023 | 97 | 124 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L++llP+ K++ a++Le A +Y++ Lq mrna10203.1-v1.0-hybrid 97 LQKLLPWE-----NKMDTATMLESAHRYVRFLQ 124 99*****7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.121 | 74 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0021 | 79 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-8 | 88 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.2E-8 | 90 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-4 | 97 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MDDRLFSPIS TELPLYQYGV VLSPNDYSIF NHLPNLLTLD NSPYKRTRLL DSTHHTLAAS 60 SAYQLYPSPS VVAPCGRRLA SERRQSGQTL SDKTRCLQKL LPWENKMDTA TMLESAHRYV 120 RFLQAQVAAL QAMPIVASDF SLPVLTRGGG EDWFWGRCGP GFLVFTVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10203.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463010.1 | 1e-73 | PREDICTED: uncharacterized protein LOC105351134 | ||||
TrEMBL | A0A2P6S2I0 | 3e-49 | A0A2P6S2I0_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_010109560.1 | 5e-22 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13426 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22100.1 | 2e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna10203.1-v1.0-hybrid |