PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10079.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 467aa    MW: 50882.7 Da    PI: 6.9703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10079.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY82.44.5e-26146202259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               DgynWrKYGqK+vk+ + +rsYYrCt+++C+vkk +e ++  ++++ei+Y+++H+h+
  mrna10079.1-v1.0-hybrid 146 ADGYNWRKYGQKQVKSPPGSRSYYRCTFSECSVKK-IESCDISGHLIEIVYKSQHTHD 202
                              7********************************98.*********************7 PP
2WRKY96.22.2e-30317373359
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ ++++ v+itY+g H+h+
  mrna10079.1-v1.0-hybrid 317 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETALDNTSGVIITYKGIHDHD 373
                              9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.59E-20144204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-22144204IPR003657WRKY domain
SMARTSM007741.5E-24145203IPR003657WRKY domain
PROSITE profilePS5081118.337147204IPR003657WRKY domain
PfamPF031062.2E-18147202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.0E-31300375IPR003657WRKY domain
PROSITE profilePS5081131.318310375IPR003657WRKY domain
SuperFamilySSF1182908.76E-27311375IPR003657WRKY domain
SMARTSM007747.3E-35315374IPR003657WRKY domain
PfamPF031063.6E-23317372IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAESLEAKIE KDEEKQGLET LAVPQLAEND QYRGVGVKSA AEGIGDALIQ EQIGISHQQV  60
LASASYQHSQ GQTQNLQQSI SCPTSLSELS PTSVTQSISP APSPVLPEQR PSLQKVNGLC  120
TLEEDKQLSS DFKYISPVPF VKTSAADGYN WRKYGQKQVK SPPGSRSYYR CTFSECSVKK  180
IESCDISGHL IEIVYKSQHT HDPPRRSNCT REIKVASSAE CVGNNAVEYP CTITNDSELS  240
TTSKEPIQEN PVPERKRQSS SDSDGNGDVM MNEEHINDPE AKKRQKSNSE YSDSLLKAGK  300
KPKFVVHAAG DVGISGDGYR WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIETALDNTS  360
GVIITYKGIH DHDMPVPKKR HGAPSAPLVA AAAPASMNNL QIMQTDTGEQ QSSTQRSVEK  420
GSHQASTQWS VDKGGELTGE TLELGGEKAM ESARTLLSIG FEIKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-25303375274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10079.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287129.10.0PREDICTED: probable WRKY transcription factor 32
TrEMBLA0A2P6RI620.0A0A2P6RI62_ROSCH; Putative transcription factor WRKY family
STRINGXP_004287129.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-107WRKY DNA-binding protein 32