PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna10079.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 467aa MW: 50882.7 Da PI: 6.9703 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.4 | 4.5e-26 | 146 | 202 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYYrCt+++C+vkk +e ++ ++++ei+Y+++H+h+ mrna10079.1-v1.0-hybrid 146 ADGYNWRKYGQKQVKSPPGSRSYYRCTFSECSVKK-IESCDISGHLIEIVYKSQHTHD 202 7********************************98.*********************7 PP | |||||||
2 | WRKY | 96.2 | 2.2e-30 | 317 | 373 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ ++++ v+itY+g H+h+ mrna10079.1-v1.0-hybrid 317 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETALDNTSGVIITYKGIHDHD 373 9*******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 7.59E-20 | 144 | 204 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-22 | 144 | 204 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-24 | 145 | 203 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 18.337 | 147 | 204 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-18 | 147 | 202 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-31 | 300 | 375 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.318 | 310 | 375 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-27 | 311 | 375 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.3E-35 | 315 | 374 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-23 | 317 | 372 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MAESLEAKIE KDEEKQGLET LAVPQLAEND QYRGVGVKSA AEGIGDALIQ EQIGISHQQV 60 LASASYQHSQ GQTQNLQQSI SCPTSLSELS PTSVTQSISP APSPVLPEQR PSLQKVNGLC 120 TLEEDKQLSS DFKYISPVPF VKTSAADGYN WRKYGQKQVK SPPGSRSYYR CTFSECSVKK 180 IESCDISGHL IEIVYKSQHT HDPPRRSNCT REIKVASSAE CVGNNAVEYP CTITNDSELS 240 TTSKEPIQEN PVPERKRQSS SDSDGNGDVM MNEEHINDPE AKKRQKSNSE YSDSLLKAGK 300 KPKFVVHAAG DVGISGDGYR WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIETALDNTS 360 GVIITYKGIH DHDMPVPKKR HGAPSAPLVA AAAPASMNNL QIMQTDTGEQ QSSTQRSVEK 420 GSHQASTQWS VDKGGELTGE TLELGGEKAM ESARTLLSIG FEIKPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-25 | 303 | 375 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna10079.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287129.1 | 0.0 | PREDICTED: probable WRKY transcription factor 32 | ||||
TrEMBL | A0A2P6RI62 | 0.0 | A0A2P6RI62_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004287129.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5198 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30935.1 | 1e-107 | WRKY DNA-binding protein 32 |
Link Out ? help Back to Top | |
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Phytozome | mrna10079.1-v1.0-hybrid |