PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna10034.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 542aa    MW: 60258.1 Da    PI: 7.7897
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna10034.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.61.7e-12115236190
                     FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.............................tekerrtr 55 
                              kfY  Y   vGFs r+ k+ k   +  +++ ++ ++Cskeg +++  +                              t+++ r  
  mrna10034.1-v1.0-hybrid 115 KFYGYYCFVVGFSKRVYKNDKVtiNGVEHVSRKVWCCSKEGCEKSAANGkqdvvhntetsteeehasedetclkkrkkTKNAVRGL 200
                              6********************94444457999*********9999888789*********************98877666666778 PP

                     FAR1  56 aetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                              + +rtgC+a ++++++k +  + v k+++eHnH la
  mrna10034.1-v1.0-hybrid 201 KYSRTGCEALFVLRLDKkTMLYTVRKFVTEHNHGLA 236
                              899************998999************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-9115236IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.285264302IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-4277304IPR006564Zinc finger, PMZ-type
PROSITE profilePS501588.746430445IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MEDTNEIEDI YEIDDTDECG LRFSDAKYYD GPALGKDNYL NEDSERELRE KLEDPMIKPR  60
EADKPPDEEF PPADKINDDV YTSEWYYALK GKEVRSLTYE DLKDITFRNV KEGEKFYGYY  120
CFVVGFSKRV YKNDKVTING VEHVSRKVWC CSKEGCEKSA ANGKQDVVHN TETSTEEEHA  180
SEDETCLKKR KKTKNAVRGL KYSRTGCEAL FVLRLDKKTM LYTVRKFVTE HNHGLAEPVE  240
RQFLSCFREV TEDDISVVLS LRTAHVPTSV APVDGVYSCS CLQYESDGIL CPHIFSVLKY  300
QNVSVYPKSM ILDRWTKGGG RLKVDHTAAK SGDNMSGRLL RYSALMAEAK KACHNLSYSA  360
EGFDTGMVQL CGLVESSKNY RASKKPRVAD QEPDNGMCNV LKDPVIARTK GMHGNNVAAA  420
VNGNVGEGNK CGKCGIPGHN IRRCPLLVVE TDLAGKSVKS GRSAQSGRCD KSTKADKSGD  480
AKQSDKSAKA GNAAKSGIAV KSGKEVPSRI INIEIVTRTI TNNCFLFCRP PSSSAVKETW  540
W*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187191KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna10034.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470173.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_011470734.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like, partial
STRINGXP_004288699.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.28e-10FAR1-related sequence 3