PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna09930.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 27364.5 Da PI: 8.974 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.1 | 2.4e-11 | 116 | 205 | 1 | 82 |
EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.eg 77 f+k+lt+ dv + +rl ++k+++++ +++ ++++++t +d++g+s+ + ++++ ++ vlt+GW F+++++L mrna09930.1-v1.0-hybrid 116 FEKQLTHTDVKNDqARLAMSKEHVQKRlipllneNEDLRRGIQVTTYDSEGKSYPMVFKIWVGK-LPVLTGGWTAFCQDHNLVeMQ 200 99********998899********999***998744555999****************999987.579*************98578 PP -EEEE CS B3 78 DfvvF 82 Dfv+ mrna09930.1-v1.0-hybrid 201 DFVTV 205 98875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0024 | 116 | 220 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-14 | 116 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.76E-15 | 116 | 220 | No hit | No description |
Pfam | PF02362 | 1.0E-7 | 116 | 205 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-14 | 116 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MARLANEEDD EMMKAVFNLC HMKHALVDST KDKLFIKEQG DAFTVNVARG LPRNQRLQHD 60 VKRKALQISE QEAIYVGQGS ANSNIPQGLF YGNYVPPSLP PVPSLRQFIG ICSEPFEKQL 120 THTDVKNDQA RLAMSKEHVQ KRLIPLLNEN EDLRRGIQVT TYDSEGKSYP MVFKIWVGKL 180 PVLTGGWTAF CQDHNLVEMQ DFVTVWMFRN VATGCLCFVI DSRRLPVLET IKRRRTRSN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna09930.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024171463.1 | 1e-138 | uncharacterized protein LOC112177403 | ||||
TrEMBL | A0A2P6P5L3 | 1e-136 | A0A2P6P5L3_ROSCH; Putative transcription factor B3-Domain family |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4148 | 19 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G03170.1 | 2e-30 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna09930.1-v1.0-hybrid |