PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09780.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 306aa MW: 33146.8 Da PI: 6.7693

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09780.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109	2.5e-34	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl mrna09780.1-v1.0-hybrid 42 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-33	39	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	39	99	IPR017930	Myb domain
SuperFamily	SSF46689	1.77E-17	41	99	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	9.3E-9	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-27	138	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MYSAMHSLPL DGGVCGHGEF SGSLDGTNLP GDACLVLTTD PKPRLRWTAE LHERFVDAVT 60 QLGGPDKATP KTIMRTMGVK GLTLYHLKSH LQKYRLGKQS FKESTENSKD ASCIAECQDT 120 GSSATSSRVI AQDLNDGFQV TEALRVQMEV QRRLHEQLEV QRRLQLRIEA QGKYLQSILE 180 KACKALNDQA ATAAGLEAAK EELSELAIKV SSDCQGMTPL DTIKMPSLSE IAAAIENKSV 240 PNILARMGNC SVDSCLTSTG SPGSPMGMSS LAVKKRQRPF FGNGESLPLD GNMRQEVEWM 300 MNNIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09780.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828539	0.0	FR828539.1 Rosa rugosa mRNA for putative MYB transcription factor (myb6 gene).
GenBank	FR828545	0.0	FR828545.1 Rosa rugosa mRNA for putative MYB transcription factor (myb12 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011464129.1	0.0	PREDICTED: myb family transcription factor APL isoform X2
Swissprot	Q94A57	1e-141	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2P6QWK3	0.0	A0A2P6QWK3_ROSCH; Putative sterol 14-alpha-demethylase transcription factor MYB-HB-like family
STRING	XP_004299108.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13367	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-126	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna09780.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]