PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09702.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 365aa    MW: 41626.2 Da    PI: 8.6652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09702.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.6e-50161431128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lp+GfrFhP+deel+v+yLk+kv++++l++ ++i+e+d+yk++Pw+Lp k+  +++ewyfF++rd+ky++g+r+nra+  gyWkat
  mrna09702.1-v1.0-hybrid  16 LPAGFRFHPSDEELIVHYLKNKVTSSPLPA-TIITELDLYKYNPWELPPKALFGKEEWYFFTPRDRKYPNGTRPNRAAGLGYWKAT 100
                              799***************************.89**************966667899****************************** PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+dk+++s+ +++ +g+kk Lvfy+g+ pkg+kt+W+m+eyrl
  mrna09702.1-v1.0-hybrid 101 GTDKHIFSScGTKSIGVKKALVFYTGHPPKGVKTEWIMNEYRL 143
                              ********988889***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-5911172IPR003441NAC domain
PROSITE profilePS5100556.70416172IPR003441NAC domain
PfamPF023651.2E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAEMEQTAIE NHNLQLPAGF RFHPSDEELI VHYLKNKVTS SPLPATIITE LDLYKYNPWE  60
LPPKALFGKE EWYFFTPRDR KYPNGTRPNR AAGLGYWKAT GTDKHIFSSC GTKSIGVKKA  120
LVFYTGHPPK GVKTEWIMNE YRLLDTTIWS TTSKQKGSMR LDHWVLCRVR QKCNNMRNIW  180
EDQNITPSYK LSGNFRQVVD EPCSKEASPS IEMVRSYLYK DYPMLPYMFA SQKVLPTIKT  240
TSSISFQDTT NGNEKSCSPT PVYHEANSNK INNGGQLLVS SLDSLINPLK RKTEGNDHPQ  300
RRCSVAPSKK ICNRDYQMEE VSNGSMMNPW GLDNQLGADN LNVDQWSSII QYQELSQLIG  360
FPCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-6441813173Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09702.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306241.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A498K1W00.0A0A498K1W0_MALDO; Uncharacterized protein
STRINGXP_004306241.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-77NAC domain containing protein 25