PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna09683.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 221aa MW: 25546.4 Da PI: 5.7187 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l +v++ G+++W++ a++ g++R++ +c++rw++yl mrna09683.1-v1.0-hybrid 15 KGPWLEEEDERLTMYVRLKGNRRWDALAKESGLRRSGRSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.7e-17 | 71 | 113 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T eE+++++++++++G++ W++Iar+++ gRt++++k++w+++l mrna09683.1-v1.0-hybrid 71 ITVEEEKIILQLHELWGNK-WSKIARMLP-GRTDNEIKNYWRTHL 113 599****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.66 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-20 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-8 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.412 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-23 | 70 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-15 | 71 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.36E-12 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MAYEAAAVEG ENLRKGPWLE EEDERLTMYV RLKGNRRWDA LAKESGLRRS GRSCRLRWLN 60 YLRPNLKHGH ITVEEEKIIL QLHELWGNKW SKIARMLPGR TDNEIKNYWR THLVKKAQIQ 120 DGDAASAGNL QCTSNKAQQG YFFQEGGDMS ADKKYEFDQY QDSVEDIWGA RETYSDDLCL 180 SDFALPSSPY ETRLSDWIFE LSSEQSGITW TSDHDTNAKK * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-25 | 13 | 117 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna09683.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306261.1 | 1e-162 | PREDICTED: transcription factor MYB59 | ||||
TrEMBL | A0A2P6RB57 | 1e-140 | A0A2P6RB57_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004306261.1 | 1e-162 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53200.1 | 3e-51 | myb domain protein 27 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna09683.1-v1.0-hybrid |