PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09621.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 773aa    MW: 85714.4 Da    PI: 7.511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09621.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-094486347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +WT eE++ +  a +q G++ +++I r+++  +   q++++++ +
  mrna09621.1-v1.0-hybrid 44 AWTHEEEQSFFAALRQVGKN-FEKITRRVQ-SKNKDQVRHYYYRL 86
                             6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-113591IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-63889IPR009057Homeodomain-like
PROSITE profilePS5129312.9314091IPR017884SANT domain
SMARTSM007171.0E-64189IPR001005SANT/Myb domain
CDDcd001671.62E-64487No hitNo description
PfamPF002498.1E-74486IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MGSEAHPRRE SILVQERDPA LGLSTSNHVA VQQPVKKPTR QWAAWTHEEE QSFFAALRQV  60
GKNFEKITRR VQSKNKDQVR HYYYRLVRRM NKLLGPGLYL DSKNSKDTNA AMLRWWSLLE  120
KYSCKASKLH LKPRRFKIFM EALEHQLLKD RKKTVRKRPS QGENCPPEAP STVPNQNRPS  180
EHDRPVKLIL VDSHNIQKSG PGKASLKRSG VGVNRGNKGD ASTVKPARQR RKPSIVPSTV  240
AYKKWEKAAI AGVSLVADAA EHLERTIEKE VGQDQSSAER NSAVPVGNFL PPMPDFSQNI  300
YAENNIHNSM KLKLQLFPID DSTRRALEMD KHNPHLELTL PTRKKISSVM EHLNRKWGSS  360
SVASGELMLF PNSVQQDSPT GYLRWTQDSN VSAGDVYSMI GSPPVFRLRY GWFSSTELGS  420
VLSQAPVAPF RILGEHDNVE KMKDPVMEST PTSPPSASNQ CGDIHNDLLT SVTKNHSLDQ  480
TSDGEPNQKN NLVGDPTKST SWHEKVAGDQ GILRHQGEVD GLRLHKGTAL SAKEWADSLT  540
NISVGDLLTG VTHDLDANCI DQTLTGRSQC LPQIPFSCDS FDAAIAAHIS RQKNKMECEP  600
PMVSHVSSIW DAEETCDAFV FQKNSAFHQQ SGIALPGDCK QIASTSSAGC DRMVEDLPVV  660
ETPINDPQGD PMDECQSDPH ILGNSVKDFN ALADIYWPES LGPLDLDLPS SKYHNEDLIL  720
NDSLSGLNRL IASSLDAFQN CSFFGSNKKE PTPSVEARET ISFSDFKIGN GI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09621.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468126.10.0PREDICTED: TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2P6RB060.0A0A2P6RB06_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004304454.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1