PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09544.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 275aa MW: 29662.9 Da PI: 5.7515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09544.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.2e-11	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq mrna09544.1-v1.0-hybrid 155 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.31E-9	149	206	No hit	No description
SuperFamily	SSF47459	1.44E-17	149	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-18	151	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-8	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDPPLIHDAS FSAVNPAAYS LAEIWPFGGE PGGLGLRMGS LGGGLGESSG NRDGSLEEST 60 VTEQSGGGGR KRKDVSSEDE SSKIVSTSSA DGLKDSSGKR MKLEGARNEN GKSKAEVETS 120 SEAGDKRDEQ STKPSEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG 180 CNKVIGKALV LDEIINYIQS LQRQVEFLSL KLEAVNSRVN MNPTIEVFPS KDLNAQQFDA 240 AALLFGSHTP REYAQGSQAE WLHMQVGGSF ERTT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09544.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299622.1	0.0	PREDICTED: transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	4e-89	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2P5F690	1e-157	A0A2P5F690_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_004299622.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-87	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna09544.1-v1.0-hybrid

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]