PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09510.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 393aa MW: 43036.1 Da PI: 6.8879

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09510.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.6	6.8e-14	183	227	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky mrna09510.1-v1.0-hybrid 183 PWTEEEHKLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 227 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	6.007	1	23	IPR017884	SANT domain
PROSITE profile	PS51294	18.011	176	232	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-16	178	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-17	179	230	IPR006447	Myb domain, plants
SMART	SM00717	3.8E-10	180	230	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-10	182	227	IPR009057	Homeodomain-like
CDD	cd00167	2.04E-9	183	228	No hit	No description
Pfam	PF00249	3.2E-11	183	227	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MKVERASLEQ IQSRFEKLKK QKTNGERLLT EQNIEVRDNV VAEVEEEEEE AEILMDPEVQ 60 AVMGFGGFSS PNRVKFKLFF VFSQNRTASD PSPPKMSSSG TCSTVDPAGA SKEFMLFGVR 120 VVVDSMRKSV SLNNLSQYEQ PTEASNNNSS SGAGKDDAVA GYASENDVVH NSGGNRERKR 180 GVPWTEEEHK LFLLGLQKVG KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RSNHNRRRRR 240 SSLFDITTDS VPVIAMEEEQ VQYQDNTSHS QQLPPPPPTE SCNPNGFSMM PIFAMNVGPA 300 VVQVPTMNPT GNPTLGQGNP GGPSSKLVLP VVHSAPHPTE SCDLNLNATA DTSPLALNLS 360 LSMNSMESSS RRLPFQAMSS FSKGDNNIIS VA*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MKVERASLEQ IQSRFEKLKK QKTNGERLLT EQNIEVRDNV VAEVEEEEEE AEILMDPEVQ  60
AVMGFGGFSS PNRVKFKLFF VFSQNRTASD PSPPKMSSSG TCSTVDPAGA SKEFMLFGVR  120
VVVDSMRKSV SLNNLSQYEQ PTEASNNNSS SGAGKDDAVA GYASENDVVH NSGGNRERKR  180
GVPWTEEEHK LFLLGLQKVG KGDWRGISRN YVKTRTPTQV ASHAQKYFLR RSNHNRRRRR  240
SSLFDITTDS VPVIAMEEEQ VQYQDNTSHS QQLPPPPPTE SCNPNGFSMM PIFAMNVGPA  300
VVQVPTMNPT GNPTLGQGNP GGPSSKLVLP VVHSAPHPTE SCDLNLNATA DTSPLALNLS  360
LSMNSMESSS RRLPFQAMSS FSKGDNNIIS VA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09510.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU082130	0.0	EU082130.1 Rosa hybrid cultivar myb transcription factor (myb) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299599.2	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor MYB1R1
Swissprot	Q2V9B0	1e-65	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2P6P2B6	1e-145	A0A2P6P2B6_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004299599.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	1e-56	MYB_related family protein

Link Out ? help Back to Top
Phytozome	mrna09510.1-v1.0-hybrid

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]