PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09434.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 274aa    MW: 30680 Da    PI: 8.6875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09434.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-10411221598
                              -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                       B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                                 lp + ++++g+  e s  + l+ ++   sW v+l+ + + +r++l+kGW++F +   +++  f+vF+++g+ s f   v++f 
  mrna09434.1-v1.0-hybrid  41 GKELPEPAVRKYGNCMEDS--IFLKVPNCeTSWPVELKKTIRHSRIWLQKGWEQFTDFYSVDQDYFIVFSYEGKhSHF--QVHIFH 122
                              4678999999998776665..7777755449******99999999***************************976777..999886 PP
2B345.91e-141912701392
                              TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                 l +p +f+ ++  g+   +s  +tl+ e  r+W+v ++++k++ +  +  +GWk Fvk+n+L++gD + F+l+g+++ + 
  mrna09434.1-v1.0-hybrid 191 V-YLNIPAHFTIKNlcGIG--SSCNVTLQIEGKRTWTVLCSVSKCGLKaRFNPAGWKAFVKDNQLEAGDHCRFELIGERKLKV 270
                              3.389*********98655..45579999999********7766665534455***********************9655543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.97E-1426121No hitNo description
Gene3DG3DSA:2.40.330.101.6E-1426124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1426124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.89627124IPR003340B3 DNA binding domain
SMARTSM010190.001328124IPR003340B3 DNA binding domain
PfamPF023621.2E-741123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.7E-20173272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20174272IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.659178273IPR003340B3 DNA binding domain
CDDcd100174.30E-17178272No hitNo description
SMARTSM010191.0E-6180271IPR003340B3 DNA binding domain
PfamPF023621.7E-12188270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MATMSRPMAS RSNREGRGHA FPVDSPSFCL KIVTGVDLQD GKELPEPAVR KYGNCMEDSI  60
FLKVPNCETS WPVELKKTIR HSRIWLQKGW EQFTDFYSVD QDYFIVFSYE GKHSHFQVHI  120
FHNNNMEIDY PICGGGGGGC MSNLQGSSFP SASSAARDQN SNNLQGFHGA NKYKVDKPRF  180
WITMTASYLS VYLNIPAHFT IKNLCGIGSS CNVTLQIEGK RTWTVLCSVS KCGLKARFNP  240
AGWKAFVKDN QLEAGDHCRF ELIGERKLKV VIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09434.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301270.10.0PREDICTED: B3 domain-containing protein Os03g0212300-like isoform X1
TrEMBLA0A2P6P2301e-155A0A2P6P230_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301270.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2215024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-12B3 family protein