PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna09412.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 928aa MW: 105740 Da PI: 7.8905 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5e-11 | 424 | 468 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WTt+Ed+ ++ +v++ G ++W Ia+ +g++Rt+ qc r+q mrna09412.1-v1.0-hybrid 424 GPWTTDEDKMILYLVQKNGVNDWINIAEAVGTNRTPFQCLARYQR 468 89*****************************************96 PP | |||||||
2 | Myb_DNA-binding | 42.2 | 1.8e-13 | 477 | 520 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT++Ed +l av+ +G ++W ++a+ ++ gRt+ qc +rw k mrna09412.1-v1.0-hybrid 477 REWTKDEDAQLSSAVEAFGERDWQSVASALN-GRTGTQCSNRWKK 520 68*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 44.6 | 3.3e-14 | 530 | 573 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT+eEd++l+ a ++G+++W++ a+ ++ gRt qc++r+ + mrna09412.1-v1.0-hybrid 530 GKWTPEEDKRLIVAQMLFGSKNWNKTAQFVP-GRTQAQCRDRYVN 573 79*****************************.***********77 PP | |||||||
4 | Myb_DNA-binding | 46.4 | 8.8e-15 | 583 | 625 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+eEd +l++a+++ G W+++a++++ +Rt+++c rw + mrna09412.1-v1.0-hybrid 583 EWTEEEDSRLIKAIEECGHC-WSKVAAYVP-NRTDNMCWRRWKVL 625 6*****************99.*********.***********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.854 | 318 | 417 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0064 | 322 | 419 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-10 | 325 | 341 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-10 | 390 | 429 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.87E-18 | 399 | 467 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.26 | 418 | 470 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-10 | 422 | 472 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.85E-7 | 425 | 470 | No hit | No description |
Pfam | PF13921 | 2.6E-13 | 426 | 487 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-14 | 430 | 478 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-19 | 450 | 525 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.341 | 471 | 526 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-14 | 475 | 524 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.73E-10 | 478 | 522 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-16 | 479 | 525 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.663 | 524 | 575 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-15 | 526 | 576 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.88E-25 | 527 | 622 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-12 | 528 | 577 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 530 | 573 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.47E-10 | 531 | 575 | No hit | No description |
PROSITE profile | PS51294 | 23.037 | 576 | 630 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 577 | 624 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-11 | 580 | 628 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.95E-11 | 583 | 626 | No hit | No description |
Pfam | PF00249 | 1.3E-13 | 583 | 624 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 928 aa Download sequence Send to blast |
MSPLAENDEI PYYDDDDDDE YDDGFNDDIE ALRRACMITG QDPDDVIAKN DQGKNPSIHQ 60 NDDDDIDVGP SSAPNSDSDS DFDEDLELLR KIKNQFSDNK PLSLKPLCTL LPPSVSDEEE 120 DDYQTLLAVR KRFAAYENDT QGKSAVQIDP PCKSVQETCN EVSGSEAHER FPYLVTYTEE 180 GKPSTSIEWN QSDSCKPSMS PTKSSGFPKS ALAFWDAIIK NRSCQKFLGS KLIQIKAKIE 240 ENNKLKQRVK ILRDFQAHCK RRTGEALSQK KDPCVQLILT KRPRVDSKAH DRAISALSYG 300 PEENSHVADY RKALTKFPVS LDRKNWSEAE KKDLQKGIRQ QFQEMVLQSS MDESSYSETR 360 HGDSDAIDNI LASIKDLEIT PYSIKEFLPK VNWEQLASMY VPGRSGGECE ARWLNWEDPL 420 VNHGPWTTDE DKMILYLVQK NGVNDWINIA EAVGTNRTPF QCLARYQRSL NASILKREWT 480 KDEDAQLSSA VEAFGERDWQ SVASALNGRT GTQCSNRWKK SLHPTRTRAG KWTPEEDKRL 540 IVAQMLFGSK NWNKTAQFVP GRTQAQCRDR YVNSLEPSLK WCEWTEEEDS RLIKAIEECG 600 HCWSKVAAYV PNRTDNMCWR RWKVLFPDEV PLLREEKKIR KTALIRNFVD REKERPALGP 660 NDFLLQDGTS RKSLTRKTGG LSRVPKKIKP RRHRNNAQLC SEEETGTSNS EVETYDDDDA 720 SKKRKKKNVL KPHQIRHKDN EPTGDCEAVA LVPKKIRPRR NRNSGQIPGV SHSEVRTCNG 780 DDAMKKKIRR HRRQKGTEPT GECKAIVPVS NEDDAPKEPT EKSCSDQIIG TSDEEKAISH 840 FLHESKKRKL EVADDETDNP VVASLGKKKY KKRHAQTTKR HAQIQEATIK SGKEQASSGD 900 DMTLNCFLRN RSKKRRESGR GDIQNFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-29 | 392 | 616 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-29 | 392 | 616 | 6 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 721 | 725 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna09412.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301260.1 | 0.0 | PREDICTED: myb-like protein L | ||||
TrEMBL | A0A2P6P1X0 | 0.0 | A0A2P6P1X0_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004301260.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7441 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 0.0 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | mrna09412.1-v1.0-hybrid |