PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09346.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-X1
Protein Properties Length: 2147aa    MW: 233658 Da    PI: 8.1039
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09346.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1223.4e-07546564119
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                              CG+H+C+++CH GpC+pC+
  mrna09346.1-v1.0-hybrid 546 CGRHRCERKCHVGPCDPCQ 564
                              ******************6 PP
2zf-NF-X119.12.9e-06610627118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG+H C+++CH+GpC++C
  mrna09346.1-v1.0-hybrid 610 CGNHVCSEICHPGPCGEC 627
                              ****************** PP
3zf-NF-X121.93.8e-07668685118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG H+Cq++CH+G+CppC
  mrna09346.1-v1.0-hybrid 668 CGVHQCQQICHTGDCPPC 685
                              ****************** PP
4zf-NF-X116.32.1e-05764781118
                 zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                              CG+H+C++lCH G CppC
  mrna09346.1-v1.0-hybrid 764 CGQHSCESLCHSGHCPPC 781
                              ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.25E-7370438No hitNo description
PROSITE profilePS500168.778376437IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.48379435IPR001841Zinc finger, RING-type
PROSITE patternPS013590379434IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.30E-6468529No hitNo description
SMARTSM004380.17491509IPR000967Zinc finger, NF-X1-type
PfamPF0142211493508IPR000967Zinc finger, NF-X1-type
CDDcd060084.79E-13536582No hitNo description
PfamPF014221.2E-5546563IPR000967Zinc finger, NF-X1-type
SMARTSM004386.5E-5546565IPR000967Zinc finger, NF-X1-type
CDDcd060081.44E-11600643No hitNo description
PfamPF014220.0013610627IPR000967Zinc finger, NF-X1-type
SMARTSM004385.0E-5610629IPR000967Zinc finger, NF-X1-type
CDDcd060086.20E-16658704No hitNo description
PfamPF014221.2E-5668685IPR000967Zinc finger, NF-X1-type
SMARTSM004388.8E-5668687IPR000967Zinc finger, NF-X1-type
CDDcd060081.99E-6716775No hitNo description
PfamPF0142237726737IPR000967Zinc finger, NF-X1-type
CDDcd060081.98E-10754797No hitNo description
PfamPF014222.0E-4764781IPR000967Zinc finger, NF-X1-type
SMARTSM004380.002764783IPR000967Zinc finger, NF-X1-type
CDDcd060086.41E-8811859No hitNo description
PfamPF0142247821838IPR000967Zinc finger, NF-X1-type
SMARTSM004380.036821839IPR000967Zinc finger, NF-X1-type
CDDcd060081.04E-4864922No hitNo description
PfamPF014220.18874889IPR000967Zinc finger, NF-X1-type
SMARTSM004380.84874904IPR000967Zinc finger, NF-X1-type
CDDcd060081.34E-6902951No hitNo description
PfamPF01422120906928IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1913934IPR000967Zinc finger, NF-X1-type
PfamPF014243.9E-510451110IPR001374R3H domain
Gene3DG3DSA:3.30.70.3302.6E-511481201IPR012677Nucleotide-binding alpha-beta plait domain
PfamPF027053.8E-15613831970IPR003855Potassium transporter
TIGRFAMsTIGR007945.1E-19713832146IPR003855Potassium transporter
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0071805Biological Processpotassium ion transmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0015079Molecular Functionpotassium ion transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 2147 aa     Download sequence    Send to blast
MDWVGFCLFG LLNISHLPDD VISFLASGCI FMRACGLPPV WKGAADVSRV LDWVWAAPHL  60
FWQGVGCGTL ASSSACGLGD LAFVGDNIGV VKRGGNRTWV KVKTVDCGLI GLICDCSLYS  120
FSFSVDQFEL SKLLGDRSCE GLVGSVNMAS QVRGERRDNN RSRNPSQPRW VPRGSNPTAA  180
AVNPPPPGFS LNLQNGNANG PAAGESRQHR GGHGGNGGQP NHVSAPGESR QHRGGYNGNG  240
GQLNQVSGPS ESRQQRGGHN GNGGQSNYSF TPSDGRQHRG GHNGIVGQFN HSSVPSESRQ  300
HRGGHNGNGG QSNQSSTLSE NREHRGGHHG YRGNVVRPVN HRREREKSES QEGMGMKDSS  360
LPQLVQEIQD KLTKGTVECM ICYDMVRRSA PVWSCSSCYS IFHLNCIKKW ARAPTSIDMS  420
AGKNQGFNWR CPGCQSVQLT SSKEIRYVCF CGKRTDPPSD LYLTPHSCGE HCGKPLEKEV  480
AGRGISKDDL CPHMCVLQCH PGPCPPCKAF APPRLCPCGK KTITTRCSDR TSVLTCGNQC  540
SKLLDCGRHR CERKCHVGPC DPCQVPFNAS CFCLKKVEVV LCEEMTVKGE VKAEDGVFSC  600
SSSCCKKLSC GNHVCSEICH PGPCGECNLM PQNVKTCHCG KTSLQEERQS CLDPIPTCSQ  660
ICEKTLPCGV HQCQQICHTG DCPPCLVKVT QKCRCESTSR NVECCNTTME NQKFTCDKPC  720
GRKKNCGRHR CSERCCPLSN SNNRLSGDWD PHLCSMPCGK KLRCGQHSCE SLCHSGHCPP  780
CLDTIFTDLT CACGRTSIPP PLPCGTPPPS CQLPCSVPQP CGHSSSHSCH FGDCPPCSVP  840
VPKECIGGHV VLRNIPCGSK DIKCNKSCGK IRQCGMHACG RTCHPPPCES SSSAEVGSKS  900
SCGQICGAPR RDCRHTCTAP CHPYASCPDA RCDFLVTITC SCGRITANVP CDSGGSNASF  960
NAGTVFEASI IQKLPVPLQP VEATNKKVPL GQRKLMCDDE CAKLERKRVL ADAFDIVPPN  1020
LDALHFGETN VTSELLSDLF RRDPKWVLSV EERCKQLVLG KSKGATSGLR VHVFCPMLKE  1080
KRDVVRVIAD RWKLAVQAAG WEPKRFIVVH ATPKSKVPAR VLGVKGTTTV NTSQPPAFDH  1140
LVDMDPRLVV SFPDLPRDAD ISALVLRFGG ECELVWLNDK NALAVFNDPA RAATAMRRLD  1200
NGTLYHGAIA VLSVASSGSN AWGGVGIAKE GAYTALKGNA WKKAVIRESS WREDSWGDEE  1260
LSGGSADVQA SVWKKEAPIA ASLNRWSVLD SEVPLGSSSV SPTVEDSGKH TSAGVSPTVE  1320
DSGKHTTAGL ISMVESNASG STPSNASSST SMGQLGGSIA ETSEVPNMDW DSQLSSATSS  1380
NQLKSLGVLY GQMSTAPLYV FGTIHAKDIK SEDTVYELFS FIFWTMSIIS FLKYACIVLR  1440
ADDNGEGGTF ALYSLLCRHA KVGLLPNDKS SNEVMHYERE IPFWIKVESR AKRAIEKHKS  1500
SHYVMLVLAL LGSCMTIGIG VLTPALSVYS ASTGVQRSLS DMAKKFSSSE NKQDSLAKAF  1560
KDYVPVPLAS AILVCLFTLQ HYGTRKIGFM FAPIIIIWLI CIGGVGIYNI FYWDRKIIHA  1620
ISPVYMYRFV RNINVGRWRA LGSIVLCVAG SEAMYADLGH FRKKSIKITF VCLIYPVLVL  1680
CYAGQAAFIS KNFHDDDYNH LSVSVPLSVR HWFTALSLLA SAVGSQATIT ASFSIINQCL  1740
ALGCFPRVKV IHTSDKIHGQ VYIPDINWIL MVLCLTVTIG FHNIEKIGNA TGLAVISAMV  1800
VTTCLMSLVI ALYWEKSLFE SICFLLFFGF IEAMYVSACI LNFHKGAWYL VFLLALSLTI  1860
MLSWHYGTKK KLEFDLTNKV SAEWLVAISP ALGVTRVPGI GFIYTDIVSG IPAFFSHFIT  1920
NLPAFHQVLI FVSFKSLPVP YVPATRRYLV GRIGPKDLKI YRCVVRYGYC DHIRDTDDFE  1980
EEIIGSIGEF ISVEENDFDN SFQDRMIIVG KPPSNGSALI PLSEITSCED SVSLVHSESR  2040
LGTLADACES GLVSMQRKKV RFMLPPNSPK MRVSVREELQ ELIDARESGA AYFLGQVHLA  2100
VRDGSNIFKR LLIMTYVLSE KNCREPPVAL NIPHAALVEV GMVCSI*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09346.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464477.10.0PREDICTED: LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2I4DI790.0A0A2I4DI79_JUGRE; Potassium transporter
STRINGXP_004299509.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1