PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09297.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HD-ZIP
Protein Properties Length: 774aa    MW: 85161.5 Da    PI: 5.766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09297.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.9e-202075156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             +++ +++t++q+++Le++F+ +++p++++r +L+++lgL  rq+k+WFqNrR+++k
  mrna09297.1-v1.0-hybrid 20 KKRYHRHTSNQIQRLEAMFKDCPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 75
                             678899***********************************************998 PP
2START181.35.3e-572194432206
                              HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-T CS
                    START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWde 74 
                              +a  a++el+++ + ++p+W+kss    + +n + + ++f+++ +       ++ea+rasgvv+m+   lv  ++d ++    + +
  mrna09297.1-v1.0-hybrid 219 IAANAMEELLRLLQTNDPLWMKSStdgkDVLNLESYDRIFPRATThlknpnLRIEASRASGVVIMNGLALVDMIMDPNKfgeLFPT 304
                              67889*******************999888999999999999888*********************************67767777 PP

                              T-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEE CS
                    START  75 tlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgil 153
                               +  a t+evissg      g+lqlm+ elq+lsplvp R+f+f+Ry+ q ++g w+ivdvS d +++++  ++  R+++lpSg+l
  mrna09297.1-v1.0-hybrid 305 IVSMARTIEVISSGmlgshsGTLQLMYKELQLLSPLVPtREFYFLRYCHQIEQGHWAIVDVSYDFPRDNQ-FANQSRSHRLPSGCL 389
                              777******************************************************************9.8************** PP

                              EEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 154 iepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                              i++++ng+skvtwvehv+ +++ p h l+r l++sg+a+ga +w+ +lqr ce+
  mrna09297.1-v1.0-hybrid 390 IQDMPNGYSKVTWVEHVEIEEKAPiHRLYRDLIHSGQAFGAERWLVALQRMCER 443
                              ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22571IPR009057Homeodomain-like
SuperFamilySSF466895.43E-201281IPR009057Homeodomain-like
PROSITE profilePS5007117.881777IPR001356Homeobox domain
SMARTSM003891.6E-191881IPR001356Homeobox domain
CDDcd000865.23E-191978No hitNo description
PfamPF000461.1E-172075IPR001356Homeobox domain
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PROSITE profilePS5084851.091209446IPR002913START domain
SuperFamilySSF559618.49E-41210445No hitNo description
CDDcd088756.39E-115213442No hitNo description
SMARTSM002342.6E-48218443IPR002913START domain
PfamPF018521.4E-48219443IPR002913START domain
Gene3DG3DSA:3.30.530.207.5E-9219413IPR023393START-like domain
SuperFamilySSF559611.37E-25464693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MEFGGGSGGD HDGSDSHRRK KRYHRHTSNQ IQRLEAMFKD CPHPDEKQRL QLSRELGLAP  60
RQIKFWFQNR RTQMKAQHER ADNSVLRSEN DKIRCENIAI REALKNVICP SCGVPPINED  120
NYFDEHKLRM ENAQLKEELD RVSSIAAKYI GRPISQLPPV QPIHISSLDL SMASFGGHGM  180
GGPSLDLDLL PGSTSSTMPS LPYQPIGISD MDKSLMTDIA ANAMEELLRL LQTNDPLWMK  240
SSTDGKDVLN LESYDRIFPR ATTHLKNPNL RIEASRASGV VIMNGLALVD MIMDPNKFGE  300
LFPTIVSMAR TIEVISSGML GSHSGTLQLM YKELQLLSPL VPTREFYFLR YCHQIEQGHW  360
AIVDVSYDFP RDNQFANQSR SHRLPSGCLI QDMPNGYSKV TWVEHVEIEE KAPIHRLYRD  420
LIHSGQAFGA ERWLVALQRM CERYACLMVS GTSTRDLEGV IPSPEGKRSM MKLAQRMVNN  480
FCASISTSNG HRWTTISGMN EVGVRVTIHK STDPGQPNGV VLSAATTIWL PLSPQTVFNF  540
FKDERTRPQW DVLSNGNAVQ EVAHIANGSH PGNCISVLRA FNTSQNNMLI LQESCIDSSG  600
SLVVYCPVDL PAINIAMSGE DPSYIPLLPS GFTITPDGRQ DQGDTSASTS SCSNINHIGG  660
SGSLITVAFQ ILVSSLPSAK LNMESVNTVN NLIGTTANDL VTCPSQSGYA SAAMEHQPTV  720
AVVEVDEVVV VGGEVGLELG SEVEDEGLGV EVRREKECGP EPEGFGKEVD MGG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09297.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299483.10.0PREDICTED: homeobox-leucine zipper protein HDG11
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLA0A2P6P1K50.0A0A2P6P1K5_ROSCH; Putative transcription factor & lipid binding Homobox-WOX family
STRINGXP_004299483.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]