PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09222.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 451aa    MW: 50412 Da    PI: 6.1044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09222.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-09258287332
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC.. CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkask 32 
                              ++h + Er+RR ++N++f+ Lrel+P+++k
  mrna09222.1-v1.0-hybrid 258 TKHFATERQRRVQLNDKFSALRELVPNPTK 287
                              78*************************852 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-8252306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.902255309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-7258291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-6258304No hitNo description
PfamPF000107.0E-7258286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MYVDSSTAAA GACNFDPNTD TNPMSESAPE VVLHHQNNPT TFASTHDENL RSLSMEEELS  60
NYHHNHNAAM EIEQQLQTEM GFGTMDQNTN NTNPHLINPF DTHQATNWDN NDEMQQQQQL  120
PPVAPTPDLL SLFHLPNSSV LPHSSITFTN PKTPGGCFPG SFGYETLPET PSGAVASNSV  180
MYDPMFHLNQ LPPQPQPPLF RELLQSLPHG YKRNGSSLFS NGGDEVDDGS RQLFENGVLE  240
FSKEMKPFGR GRGGNKGTKH FATERQRRVQ LNDKFSALRE LVPNPTKELK RTVSELKLLV  300
EKKRCGRERS KRHKTEQDIG ARDDDESCNM KPLGDPDHDH SYNNGSLRSS WLQRKSKDTE  360
VDVRIIDDEV TIKLVQRKKI NLLLSVSKLL DELQLELHHA AGGHIGNSYS FLFNTKMYEG  420
SSLYASAIAN KLIDTVDRQY AAAIPPTNSY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09222.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308623.10.0PREDICTED: transcription factor bHLH91-like
RefseqXP_011469415.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A2P6SCU10.0A0A2P6SCU1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004308623.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-70bHLH family protein