PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna09220.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NF-YC

Protein Properties

Length: 350aa MW: 38048.3 Da PI: 4.7896

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna09220.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.5	7.2e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +P l+ska elf+ +l r++ + + +t++ ++++v+ ++fdfl div + mrna09220.1-v1.0-hybrid 6 DTRFPAARIKKIMQTDEDVGKIALAVPLLVSKALELFLQDLCDRTYEITLKRGAKTMNSLHLKQCVKTFNVFDFLKDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.0E-25	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	6.01E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	9.6E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEITLKRGAK 60 TMNSLHLKQC VKTFNVFDFL KDIVSKVPDL GGSDAVGDEC SVAKRRKVSV DDEDTESDDE 120 TKRSKMMIDG GNTVGSGRGR GRGRGRGRKL VADDEDTDTD EESKASMMVH DAGNTPGSGR 180 GRGRGRGRPR GRPRGSRTVG REISAPNEKY EDDLDISKHE DKLDEPLELR DDAIEPKGSK 240 ENISGANSAE IAARNFDLNV DLNENEDSAT TSAAVHGPVP APSTATATAT ATATAPVPAN 300 LSSQFTPDMK HVEFLGWPLT GMETMAIDPV QLANLTRKID EDEEDYDED*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MRKKLDTRFP AARIKKIMQT DEDVGKIALA VPLLVSKALE LFLQDLCDRT YEITLKRGAK  60
TMNSLHLKQC VKTFNVFDFL KDIVSKVPDL GGSDAVGDEC SVAKRRKVSV DDEDTESDDE  120
TKRSKMMIDG GNTVGSGRGR GRGRGRGRKL VADDEDTDTD EESKASMMVH DAGNTPGSGR  180
GRGRGRGRPR GRPRGSRTVG REISAPNEKY EDDLDISKHE DKLDEPLELR DDAIEPKGSK  240
ENISGANSAE IAARNFDLNV DLNENEDSAT TSAAVHGPVP APSTATATAT ATATAPVPAN  300
LSSQFTPDMK HVEFLGWPLT GMETMAIDPV QLANLTRKID EDEEDYDED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-21	2	72	5	75	Transcription Regulator NC2 alpha chain

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	146	RGRGRGRGRG
2	183	193	RGRGRPRGRPR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna09220.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307150.1	0.0	PREDICTED: myoneurin-like
TrEMBL	A0A2P6SCT3	1e-152	A0A2P6SCT3_ROSCH; Putative transcription factor Hap3/NF-YB family
STRING	XP_004307150.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-55	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	mrna09220.1-v1.0-hybrid