PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna09163.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 359aa MW: 40331.5 Da PI: 4.869 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 69.8 | 3.7e-22 | 268 | 317 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+dl++yF l+i++A+ +L c+Tv+KriCR++G++RWP Rkiks+ mrna09163.1-v1.0-hybrid 268 AKMKLDDLRAYFRLTIEEASEQLRFCPTVVKRICRKFGVSRWPARKIKSI 317 7899********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.733 | 257 | 337 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-20 | 270 | 317 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MEARSMTDSP WAVVAYHDPY DHEVPDVLSF VNDSPDPTLD ALFDGGVVPS SPHEYPIPQF 60 DNGIQDFPMS PMWDLGNNYN GVGNYAIPAD HPSQCFEGGG GGESGVDQNP GLAIENNVMQ 120 PPVGAPPPIN FSCFGCQVLR EIVHFNCDYI MTLEIHGRLG AICHAIQESR ANYLYNSSIS 180 SEPHYQNIDF CNKGIEEVKQ FLTLYCLERK VEGYIMQQDP LQAFYQTLCV GMDGEAEEME 240 QSAEEASPKG NGPRLPRYSL AEQRERAAKM KLDDLRAYFR LTIEEASEQL RFCPTVVKRI 300 CRKFGVSRWP ARKIKSIEKQ ISSLRPLLYS CSESTRVHVA AKIKRFEREV ARFVPYVD* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna09163.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301476.1 | 0.0 | PREDICTED: uncharacterized protein LOC101302563 | ||||
TrEMBL | A0A2P6PER9 | 0.0 | A0A2P6PER9_ROSCH; Putative transcription factor Nin-like family | ||||
STRING | XP_004301476.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7478 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24020.1 | 1e-13 | NIN like protein 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna09163.1-v1.0-hybrid |