PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna09147.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 36108.9 Da PI: 9.9976 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.8 | 3.9e-32 | 261 | 319 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ +dp+++++tYeg+Hnh+ mrna09147.1-v1.0-hybrid 261 ADEYSWRKYGQKPIKGSPHPRGYYKCSSQrGCPARKHVERAVDDPSMLIVTYEGDHNHS 319 69*************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.3E-15 | 212 | 258 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.3E-34 | 247 | 320 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.733 | 255 | 321 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-27 | 257 | 319 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-38 | 260 | 320 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-28 | 262 | 318 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAVELMMGLV DSFAAKMEEN DVKEAASAGI QSVEKFISLM SSSSASESAS LEYKAVADMA 60 VDKFRKVISL LDRGRTGHAR FRRGPVNTTT TATVSSSLPQ QAPQVLTRET GQPSFRCQDA 120 TNLKTEQSQS SSAFKVYCPK PVLRLPPLPK SGTSFSFTAS PAVSGSNSFM SGDGETTTTL 180 QHSMSSGFQL TNMSNMSVSS AGKPPLPSSS FKRKCNSVDD STAMRCGSSS SRCHCSKKRK 240 SRVKRVTRIP AISTKMADIP ADEYSWRKYG QKPIKGSPHP RGYYKCSSQR GCPARKHVER 300 AVDDPSMLIV TYEGDHNHSQ AVTEAMAAIV LESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-22 | 247 | 318 | 1 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00450 | DAP | Transfer from AT4G24240 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna09147.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291076.1 | 0.0 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | Q9STX0 | 1e-106 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A1S5SLA8 | 0.0 | A0A1S5SLA8_FRAVE; WRKY transcription factor 9 | ||||
STRING | XP_004291076.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 7e-80 | WRKY DNA-binding protein 7 |
Link Out ? help Back to Top | |
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Phytozome | mrna09147.1-v1.0-hybrid |