PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09139.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 424aa    MW: 47994.9 Da    PI: 6.0064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09139.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011161184123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              y+C+ Cg+ ++++ +L++H r  H
  mrna09139.1-v1.0-hybrid 161 YVCGVCGRKCKSNLELTKHFRQlH 184
                              9******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10104.6E-681151IPR029060PIN domain-like
PROSITE profilePS5015710.97161189IPR007087Zinc finger, C2H2
PROSITE patternPS000280163184IPR007087Zinc finger, C2H2
CDDcd061676.17E-12172315No hitNo description
Gene3DG3DSA:3.40.50.10104.6E-6246314IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MVHPIIISNP TFTCIKPLPL LFLNSSQSPF FNPQLTQILN PKPSSVSFHT TPTWRRTAVT  60
SSANNSEIDM VRNKQGVYTP KHKKVVILWD LDNKPPRGPP YQAAMALKQV AQHFGEVVDV  120
SAYANRHAFI HLPNWVVEQR RERKQLDILE RKGIVTPPEP YVCGVCGRKC KSNLELTKHF  180
RQLHERERQK KLNRMRSLKG KKRQRFKERF ISGNHKYNEA ASSLIKPKVG YGLASELRRA  240
GVFVKTVEDK PQAADWALKR QMQHSMSRGI DWLFLVSDDS DFQDMLRKAR EASLGTVVVG  300
DWDRALGRHA DVWVPWTGVE KGEISEKDLV PKRRSEFSDE EEDEGGDVSL FSDFDLSGGS  360
ELDNVVDDLV GARSQGSGGV RISAFSEGEV EEGDWEEDYE ESEDGDYLSE GEDVDSDDED  420
GFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09139.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292807.10.0PREDICTED: uncharacterized protein LOC101312318
TrEMBLA0A2P6Q0K30.0A0A2P6Q0K3_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004292807.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64413135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-174C2H2-like zinc finger protein