PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09137.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 160aa    MW: 18020.9 Da    PI: 9.5994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09137.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-183887255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+G+r +k +g+WvAeIr+p   +kr+r++lg++ t+  Aa+a++ a  +l+g
  mrna09137.1-v1.0-hybrid 38 PYRGIRMRK-WGKWVAEIREP---NKRTRIWLGSYTTPVAAARAYDTAVFYLRG 87
                             69*****99.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-3738101IPR001471AP2/ERF domain
PROSITE profilePS5103222.1153895IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-213896IPR016177DNA-binding domain
PfamPF008476.4E-113987IPR001471AP2/ERF domain
PRINTSPR003677.2E-123950IPR001471AP2/ERF domain
CDDcd000183.93E-283997No hitNo description
Gene3DG3DSA:3.30.730.102.5E-303996IPR001471AP2/ERF domain
PRINTSPR003677.2E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEGEYSCSSS SSSSTTTSLE KRKKRQHEHD DHNNQEKPYR GIRMRKWGKW VAEIREPNKR  60
TRIWLGSYTT PVAAARAYDT AVFYLRGPSA RLNFPELVFQ EGQLHDMSSA SIRKKATEVG  120
TKVDALQTAL RSPSSQSKVG SQVKPDLNEY PDPENSDDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153798466ATERF1
3gcc_A2e-153798466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09137.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291085.11e-117PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC302e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A3S8T9091e-115A0A3S8T909_FRAAN; Transcription factor ERF6
STRINGXP_004291085.11e-116(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.15e-54cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]