PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09127.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 458aa    MW: 51728.4 Da    PI: 5.7966
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09127.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.31.2e-2661342128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk 79 
                              ppG+rFhP++e+l+++yL  k +   ++   + i e+ d+ ++eP++L++       +k+++++wyf++    +      ++++tk
  mrna09127.1-v1.0-hybrid   6 PPGCRFHPSEEQLLSYYLSSKKAYPAIPGaYDWIGELhDLRRLEPSELQNwswysyDYKGRKRHWYFYMAGVWE------EEKKTK 85 
                              9********************999997761456**999**********966788876677888*****997664......456789 PP

                      NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +gyWk +gk ++v++++g + g+k+++v+y+g+  ++++tdWv+  y+l
  mrna09127.1-v1.0-hybrid  86 QGYWKRSGKVRDVFNRQGVVLGTKTSFVYYEGSPDTASRTDWVLYRYAL 134
                              9*********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-274149IPR003441NAC domain
PROSITE profilePS5100533.2445150IPR003441NAC domain
PfamPF023653.8E-156134IPR003441NAC domain
SuperFamilySSF635702.35E-29236324IPR002004Polyadenylate-binding protein/Hyperplastic disc protein
PROSITE profilePS5130918.382249326IPR002004Polyadenylate-binding protein/Hyperplastic disc protein
Gene3DG3DSA:1.10.1900.108.1E-26254324IPR002004Polyadenylate-binding protein/Hyperplastic disc protein
PfamPF006582.8E-24256321IPR002004Polyadenylate-binding protein/Hyperplastic disc protein
SMARTSM005174.3E-33261324IPR002004Polyadenylate-binding protein/Hyperplastic disc protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MADTFPPGCR FHPSEEQLLS YYLSSKKAYP AIPGAYDWIG ELHDLRRLEP SELQNWSWYS  60
YDYKGRKRHW YFYMAGVWEE EKKTKQGYWK RSGKVRDVFN RQGVVLGTKT SFVYYEGSPD  120
TASRTDWVLY RYALANHIEG SFVICRVFSR SDSDFNSCDD NNAGVVTPEP VSTTSNQENL  180
AQVVYFHLRP LYDCFIPPTR AVPYWGSRPW RTPSASYWGR PHIEASRYIG TTLPPTPPVG  240
SKPCSQRVDL SHLTTLLVNL APEERRNMLG ERLFPLVDML EMDKAPKVTG MLLELDNPEV  300
LHLLESPEAL KAKVAEAMDV LAKAAVDRAS FVLCRVFVRS QGGTNISENG LSSCAEETVS  360
TVRHIGIQHD GFYTPHIVPE IDGDKSVPRN TDKSKDQKRP ETEVDKQVET RLVSSIQTNG  420
QVPLLSVSNP VLLDGLSSEH LLSLIEGDFI ELDDLID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dyd_A4e-242533241081Poly(A)-binding protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09127.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292808.10.0PREDICTED: NAC domain-containing protein 66-like
STRINGXP_004292808.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.14e-17NAC domain containing protein 52