PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09125.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 872aa    MW: 96031.9 Da    PI: 6.4464
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09125.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.2e-15130176455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               hn  E+rRR++iN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  mrna09125.1-v1.0-hybrid 130 VHNLSEKRRRSKINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 176
                              6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-20123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-20123186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.91E-16129180No hitNo description
PfamPF000107.9E-13130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-18132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.200.203.2E-30397432No hitNo description
SuperFamilySSF561121.89E-79521815IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.203.2E-30531605No hitNo description
SMARTSM002203.2E-34543821IPR000719Protein kinase domain
PROSITE profilePS5001138.294543822IPR000719Protein kinase domain
PfamPF000691.6E-46545812IPR000719Protein kinase domain
CDDcd140661.37E-100549815No hitNo description
PROSITE patternPS001070549571IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.106.2E-45606811No hitNo description
PROSITE patternPS001080665677IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0046777Biological Processprotein autophosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MADLYGTPQD SEEISNILSH LLHHGGSPFK PSSYTHLLNS SVPPPSHELL ARSADRSDSD  60
RPSDFNFSDS GGYFVDSDAN TSKKKKGRRV SSENDLGDVS CDSEGPEAPE VPLNPAPPRS  120
LSKRSRAAEV HNLSEKRRRS KINEKMKALQ NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ  180
MLTMRNGLGL HPMCLPGMMQ PVELPHMALG FDEGSNKVPK SSRGTSPFFG SEENSMQSAY  240
NVSSGCTISN QPMVIPSAAN VHTPEASFVF EPSTQAYYRP VFVATSSKEL FSGEGEPPSN  300
SDSNQTGKNS SSDADKVPSK RPDSTLLNNP RSPSSLCECL SDFLWHLFTF EEAEQARLQS  360
ITMSGYTFLN DQLSRRTSIF GLHLWVVLGI CVGAAIVIVL FLISLYFTSR RNSTSPISKP  420
TQNPTIPNVS KEIQEIRIDC SRTNPPDPKP DPVVESDPLA RAQAVLLQPE EESPASTGRQ  480
RIHIEIGKDH RISYPEKGGG GSSYGSGEVR SGDQGGSTGP EVSHLGWGHW YTLRELEDAT  540
NGFADENVIG EGGYGIVYRG VLMDSSMVAV KNLLNNKGQA EKEFKVEVEA IGRVRHKNLV  600
RLLGYCAEGA HRMLVYEYVD NGNLEQWLHG DVGPVSPLTW ENRMNIILGT AKGLTYLHEG  660
LEPKVVHRDI KSSNILLDKQ WNSKVSDFGL AKLLGSERSY VTTRVMGTFG YVAPEYASTG  720
MLNERSDVYS FGILIMEIIS GRNPVDYGRP AGEVNLVEWL KTMVTNRTAE GVLDPRLPEK  780
PSSRALKRAL LVALRCVDPN AQKRPKMGHV VHMLEADEFP FRDDRRPGRE YGRSPRDAAK  840
RVMESGDSSG YDSGAQTNIS VWRKQEVEEV S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3tl8_A6e-7652081718317BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_D6e-7652081718317BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_G6e-7652081718317BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3tl8_H6e-7652081718317BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3uim_A5e-7652081710309BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
3ulz_A5e-7652081710309BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09125.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458923.10.0PREDICTED: probable serine/threonine-protein kinase At1g01540
SwissprotQ3EDL40.0Y1154_ARATH; Probable serine/threonine-protein kinase At1g01540
TrEMBLA0A2P6Q0K80.0A0A2P6Q0K8_ROSCH; Uncharacterized protein
STRINGXP_008220349.10.0(Prunus mume)
STRINGXP_004292809.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-40bHLH family protein