PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09083.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 310aa    MW: 35131.5 Da    PI: 9.3004
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09083.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-15135218293
                              EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                       B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                              +k++++s+v+   +l l  +f++++ +kk  +  +tl de+g+++e  +  rk++    l++GWk+F+ a++L +gD vvF+l++ 
  mrna09083.1-v1.0-hybrid 135 VKTMLQSHVTGGFWLGLQVQFCKDYLSKK--DEIMTLVDEEGNEYETIYLARKTG----LSGGWKGFAVAHDLVDGDAVVFQLIK- 213
                              699**********************6664..447***************656665....***********************986. PP

                              SEE..E CS
                       B3  88 sefelv 93 
                                ++++
  mrna09083.1-v1.0-hybrid 214 -PTTMK 218
                              .44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-18128222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-20128222IPR015300DNA-binding pseudobarrel domain
CDDcd100179.76E-22132222No hitNo description
SMARTSM010193.3E-17134225IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433134225IPR003340B3 DNA binding domain
PfamPF023621.1E-13135216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAKPETVSYE ESRRQRMEEN KKRMEALNLP QLSLALKTSS SPKPSPMKRT PKPKAEKQMV  60
GVRRSSRVAN LPAAPVYKEM DVVERVVIPR RYSGSTSKHR DLSNRVYASY EDRTDAMAKA  120
EKLESDLGSD YPTLVKTMLQ SHVTGGFWLG LQVQFCKDYL SKKDEIMTLV DEEGNEYETI  180
YLARKTGLSG GWKGFAVAHD LVDGDAVVFQ LIKPTTMKVK NFWDSLYIHF AVVNDPLSAA  240
REILMEKDSY IAMLFGILSS ILTDAPFHLC DYTLLPNKAI IHAHLLHKDT GLEINWRREF  300
RTLQVEVKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09083.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458939.11e-160PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ69V366e-70Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
SwissprotQ9FMZ45e-70Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2P6Q0E71e-143A0A2P6Q0E7_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004292820.11e-138(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-65B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]