PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09082.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 222aa    MW: 25295.1 Da    PI: 10.4318
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09082.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-17123208194
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f+k +++s+v+   ++ lp +f++++  + +++ t+tl de+g+++   +    ++++  l++GW++F+ a++L +gD +vF+l++
  mrna09082.1-v1.0-hybrid 123 FVKPMLQSHVTGGFWMGLPLSFCRKYL-P-KRDATVTLVDEQGEQYPTVY--LENKKG--LSGGWRGFAIAHELVDGDALVFQLTR 202
                              89************************5.3.3678****************..555555..9**********************987 PP

                              SSEE..EE CS
                       B3  87 rsefelvv 94 
                               ++f+  v
  mrna09082.1-v1.0-hybrid 203 PTTFK--V 208
                              67764..3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-24117212IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-20118211IPR015300DNA-binding pseudobarrel domain
CDDcd100172.98E-26121212No hitNo description
SMARTSM010193.6E-23123214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.196123214IPR003340B3 DNA binding domain
PfamPF023622.3E-16123208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAKPNTSYEE TRKKRMEENR KRMEALNLPQ LAQAAFPKPS PMKRQKPRKV EKQIVVVRRS  60
ARVATQPTPV YREVEVKLPR SYGRVSKHRD FSNRVYADEH SRAEATEKAE AFESGLGSDY  120
PTFVKPMLQS HVTGGFWMGL PLSFCRKYLP KRDATVTLVD EQGEQYPTVY LENKKGLSGG  180
WRGFAIAHEL VDGDALVFQL TRPTTFKVII LNFVMSTRVD T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna09082.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458940.11e-155PREDICTED: B3 domain-containing protein At5g42700-like
RefseqXP_011458941.11e-155PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ69V363e-71Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A2P6Q0E61e-134A0A2P6Q0E6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004291119.11e-122(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]