PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna09082.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 222aa MW: 25295.1 Da PI: 10.4318 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.5e-17 | 123 | 208 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k +++s+v+ ++ lp +f++++ + +++ t+tl de+g+++ + ++++ l++GW++F+ a++L +gD +vF+l++ mrna09082.1-v1.0-hybrid 123 FVKPMLQSHVTGGFWMGLPLSFCRKYL-P-KRDATVTLVDEQGEQYPTVY--LENKKG--LSGGWRGFAIAHELVDGDALVFQLTR 202 89************************5.3.3678****************..555555..9**********************987 PP SSEE..EE CS B3 87 rsefelvv 94 ++f+ v mrna09082.1-v1.0-hybrid 203 PTTFK--V 208 67764..3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.35E-24 | 117 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-20 | 118 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-26 | 121 | 212 | No hit | No description |
SMART | SM01019 | 3.6E-23 | 123 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.196 | 123 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-16 | 123 | 208 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAKPNTSYEE TRKKRMEENR KRMEALNLPQ LAQAAFPKPS PMKRQKPRKV EKQIVVVRRS 60 ARVATQPTPV YREVEVKLPR SYGRVSKHRD FSNRVYADEH SRAEATEKAE AFESGLGSDY 120 PTFVKPMLQS HVTGGFWMGL PLSFCRKYLP KRDATVTLVD EQGEQYPTVY LENKKGLSGG 180 WRGFAIAHEL VDGDALVFQL TRPTTFKVII LNFVMSTRVD T* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna09082.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458940.1 | 1e-155 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_011458941.1 | 1e-155 | PREDICTED: B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q69V36 | 3e-71 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A2P6Q0E6 | 1e-134 | A0A2P6Q0E6_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004291119.1 | 1e-122 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-59 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna09082.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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