PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08962.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 729aa    MW: 81239.5 Da    PI: 6.0336
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08962.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07127149427
                              ---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                              ++C ff+r G+C+  d+C+F+Hgp
  mrna08962.1-v1.0-hybrid 127 VPCIFFQR-GFCSKADKCPFSHGP 149
                              69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6063261IPR000571Zinc finger, CCCH-type
SMARTSM003560.0163360IPR000571Zinc finger, CCCH-type
PfamPF156635.7E-123387No hitNo description
PROSITE profilePS5010311.1976389IPR000571Zinc finger, CCCH-type
SMARTSM003560.316388IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6123149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478123150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5124148IPR000571Zinc finger, CCCH-type
PfamPF146080.1128148No hitNo description
Gene3DG3DSA:4.10.1000.107.9E-4128149IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MVVGAQPKPQ PQSQPQPQQP QQPEPSPEEE ALKRNTDCVY FLASPVSCKK GSECEYRHSE  60
HALYNPRDCW FWLNGNCLNL KCSFRHPPLD GLLESPAASS AGPSLPIPHT ATMPATNATF  120
NSSKQAVPCI FFQRGFCSKA DKCPFSHGPN SFTTSKVPQA PAATHGTEPS SHKKVFGGIQ  180
KCNQEMKIPQ VSASKIVGVP PQSKPAPKVV TAPPRNGVGI ERNVIPTRDF DDEALRYKAR  240
SGFPAMNGDS TGQANHYLQA HVSENHGFQI GKDVDEHLRE SSPGFDVLVD DELGDSDYYH  300
GEEQFGRTRV HDGRNLNSMN EYDLDRPADY NPIADGDRER FHDPRGYDPY DQMQGRYAWD  360
QHRASSERLL VGPAHSERRG YRKSDSPDHI DGSDLRHRLS KHRRGNGLRS VVSNEYDGHV  420
EERKSRPRRD PQQLPSHEGS LSSRLRGRIK LPGGSSPVNG SDLRQEREGR GRHRDRSRDR  480
SRDRLSPRRP QSMSHQGRLR DRIQGRVQED SNNNEPRNIG APRMRREVLD ERSSEFSRPK  540
RLSEPKPNNV NMENNQQSEG DLSFEGPKPL SEILKRKREA EAAAASGSRK RSSINKQGNS  600
EREGAASNPG GSGTGDVTTT LNSQSPVAKE ESKSATTDTV GTENEKNDLA PGQSSQGQQE  660
TEEGAIYDET AEYHELEGED QREGEYDYEQ GEDGEYTYEE GENADGEEEY LEEEDGDDFA  720
KKIGVMFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422429RKSRPRRD
2473483RDRSRDRSRDR
3516525RNIGAPRMRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08962.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004299447.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A2P6P1D80.0A0A2P6P1D8_ROSCH; Putative transcription factor C3H family
STRINGXP_004299447.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137