PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna08880.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB

Protein Properties

Length: 230aa MW: 25870.1 Da PI: 8.2052

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna08880.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.6e-18	15	71	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G ++Wkt+a+ g ++R++k+c++rw++yl mrna08880.1-v1.0-hybrid 15 KGAWTAEEDRKLAEYIEIHGAKRWKTVASIAGlvlspsllgLNRCGKSCRLRWLNYL 71 79*****************************************************97 PP
2	Myb_DNA-binding	50.8	3.8e-16	77	122	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l mrna08880.1-v1.0-hybrid 77 RGNISDDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 122 78999***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.174	10	71	IPR017930	Myb domain
SuperFamily	SSF46689	3.67E-28	14	118	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-15	14	73	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-16	15	71	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-23	16	78	IPR009057	Homeodomain-like
CDD	cd00167	1.94E-10	17	71	No hit	No description
PROSITE profile	PS51294	25.918	72	126	IPR017930	Myb domain
SMART	SM00717	1.7E-15	76	124	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-14	77	122	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-25	79	127	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-10	81	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010090	Biological Process	trichome morphogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0048629	Biological Process	trichome patterning
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MAPKNDGSTK KVMNKGAWTA EEDRKLAEYI EIHGAKRWKT VASIAGLVLS PSLLGLNRCG 60 KSCRLRWLNY LRPNIKRGNI SDDEEDLILR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS 120 HLSKKIKQKN EKATMASTAK ETSTTSTTTT TPPHKALNES SSARADKDEE EEEERVKLGT 180 SSEGNFDVNE FFDFSTEGSY GLDWVNKFLE LDEDPMAAAY RENNKVSIM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-28	13	126	25	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna08880.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299414.2	1e-144	PREDICTED: transcription factor WER-like isoform X1
Swissprot	P10290	3e-50	MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBL	A0A2P6P8K4	1e-136	A0A2P6P8K4_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004299414.1	1e-145	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2148	32	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-50	myb domain protein 5

Link Out ? help Back to Top
Phytozome	mrna08880.1-v1.0-hybrid

Publications ? help Back to Top
Chen B,Wang X,Hu Y,Wang Y,Lin Z Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco. Mol. Biotechnol., 2004. 26(3): p. 187-92 [PMID:15004287] Paz-Ares J,Ghosal D,Saedler H Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus. EMBO J., 1990. 9(2): p. 315-21 [PMID:2303027] Cone KC,Burr FA,Burr B Molecular analysis of the maize anthocyanin regulatory locus C1. Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5 [PMID:3025847] Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J., 1987. 6(12): p. 3553-8 [PMID:3428265] Scheffler B, et al. Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene. Mol. Gen. Genet., 1994. 242(1): p. 40-8 [PMID:7904044] Franken P,Schrell S,Peterson PA,Saedler H,Wienand U Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38. Plant J., 1994. 6(1): p. 21-30 [PMID:7920701] Singer T,Gierl A,Peterson PA Three new dominant C1 suppressor alleles in Zea mays. Genet. Res., 1998. 71(2): p. 127-32 [PMID:9717435]