PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08873.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 209aa    MW: 22945.2 Da    PI: 4.9565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08873.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-194493255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a++ ++g
  mrna08873.1-v1.0-hybrid 44 TYRGVRRRE-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALTIKG 93
                             69****999.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.93344101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3344102IPR001471AP2/ERF domain
PfamPF008475.1E-134493IPR001471AP2/ERF domain
SMARTSM003801.0E-3744107IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2244102IPR016177DNA-binding domain
PRINTSPR003676.1E-114556IPR001471AP2/ERF domain
CDDcd000181.78E-3345103No hitNo description
PRINTSPR003676.1E-116783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MPLPSFSQSP PWHSGTLFSK DMESVITQNG ERKSSEEGSE QKPTYRGVRR REWGKWVSEI  60
REPRKKSRIW LGTFATAEMA ARAHDVAALT IKGRSAHLNF PELAQELPRA ASSSPKDIQA  120
AAAKAAALSY PSCSSTVSSS SSSSSSHEAQ EHYAEPAQDS SPSETINDDT FFDLPDLLLD  180
VGHYRSDDAY CFSIVDTSIS LEEPFLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1826101172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08873.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301176.11e-134PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-47ERF34_ARATH; Ethylene-responsive transcription factor ERF034
SwissprotQ9SUK86e-48ERF39_ARATH; Ethylene-responsive transcription factor ERF039
SwissprotQ9ZQP38e-48ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A3S8T9261e-128A0A3S8T926_FRAAN; Transcription factor ERF22
STRINGXP_004301176.11e-134(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.17e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]