PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08838.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 255aa    MW: 27654.6 Da    PI: 4.7538
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08838.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.2e-1964114155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  mrna08838.1-v1.0-hybrid  64 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 114
                              68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.9E-1364114IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2165123IPR016177DNA-binding domain
PROSITE profilePS5103223.4265122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-3265123IPR001471AP2/ERF domain
SMARTSM003801.9E-3565128IPR001471AP2/ERF domain
CDDcd000185.17E-3266124No hitNo description
PRINTSPR003672.7E-106677IPR001471AP2/ERF domain
PRINTSPR003672.7E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCTTETQLG SETDSSSTSS SPPSSPASSR PLNPDNKPES LELQPKNNND KKSKRARVDS  60
SKHPVYRGVR MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN  120
FPELIDSLPR PASLAPRDVQ AAASKAAQMH QFDSTNPSLS STSSSSSLSS LVSAIDNLST  180
ESEELSEIVE LPSLGTSYES YELRSEFVFV DSADDEWVYP PPWLQQMGDC GVYVCGGLGS  240
SANSTGFEGL LWDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1960123973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08838.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291182.10.0PREDICTED: dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD37e-72DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A3S8T9250.0A0A3S8T925_FRAAN; Transcription factor ERF25
STRINGXP_004291182.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-72ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]