PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna08807.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family CPP
Protein Properties Length: 605aa    MW: 65522.5 Da    PI: 8.3819
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna08807.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.51.5e-14156195242
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                              ++k CnCk+s+Clk+YCeCfaag +C+  C+C +C+N+ ++
  mrna08807.1-v1.0-hybrid 156 KQKLCNCKNSRCLKLYCECFAAGIYCKG-CNCINCHNNVDH 195
                              7899************************.********9875 PP
2TCR50.34.8e-16237275139
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              k++kgC C+ks ClkkYCeCf+a++ Cse+CkC dCkN 
  mrna08807.1-v1.0-hybrid 237 KHHKGCACRKSGCLKKYCECFQANVLCSENCKCMDCKNF 275
                              589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.2E-17155195IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.369156277IPR005172CRC domain
PfamPF036381.5E-11158192IPR005172CRC domain
SMARTSM011141.1E-18237278IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12240275IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MEQSETVSGT APKKLARQLD FTAPVQPSAN AALPERSGPA AVQLQQQPVP QPQMHHPRAH  60
PQTQPWVQLQ SQSQPQPQPV HNSPAQLALQ SQQQGTVVAQ SPKPYLTQAV LHFQARPVGP  120
TMPVNGRIAH LPPKLGRYES PKPRARSEAK DSTPKKQKLC NCKNSRCLKL YCECFAAGIY  180
CKGCNCINCH NNVDHEAARQ DAVGAILERN PKAFRPKIAS SPHESRDSWE DAGEVQKHHK  240
GCACRKSGCL KKYCECFQAN VLCSENCKCM DCKNFDGSEE RRAIFHEDHN TVANVQQANA  300
AISGAVGSSG FGPLVSRQRP SDELFSGIGA RDQSAHRITH TQQENHLRPP MASSSLLSVP  360
TSVTPIAAVP GSSKPTYRSM LANIIQPENI KDLCSRLVVV SGEAAKAFAE NRQKETVDKT  420
TTVSATGEGK ESKTEQDQNS AHGRDGSSGS GSDGGDAQNS RPMSPGTLAL MCDEQDKMFM  480
AAEPPNGITT NSQSTTQNPS QEIGCTEVYE EQERVVLSGF RDFLNLLITR GSIKETMCSP  540
VAKREREIQK DSVEVGTPKN PRYEKVTYSN DIGKSPASTN GKVLQSVVNY VSGVGLPLKN  600
NTGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-331482862132Protein lin-54 homolog
5fd3_B1e-331482862132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna08807.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166731e-31AC216673.1 Populus trichocarpa clone POP019-C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291193.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
SwissprotQ9SZD11e-132TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2P6PZZ20.0A0A2P6PZZ2_ROSCH; Putative transcription factor Tesmin family
STRINGXP_004291193.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-121Tesmin/TSO1-like CXC domain-containing protein