PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna08793.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 1084aa MW: 119487 Da PI: 4.856 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.7e-18 | 39 | 85 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l mrna08793.1-v1.0-hybrid 39 KGQWTPEEDEILRRAVQSFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 66.5 | 4.9e-21 | 91 | 137 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l mrna08793.1-v1.0-hybrid 91 KGPWSKEEDEIIVELVEKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.1 | 2.6e-15 | 143 | 185 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ mrna08793.1-v1.0-hybrid 143 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 185 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.205 | 34 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-16 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-22 | 40 | 97 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-15 | 40 | 95 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-14 | 42 | 85 | No hit | No description |
PROSITE profile | PS51294 | 34.289 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-32 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-20 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-19 | 91 | 137 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-17 | 93 | 137 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-28 | 98 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.513 | 142 | 192 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-15 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 143 | 186 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.27E-11 | 145 | 185 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-21 | 146 | 192 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 1084 aa Download sequence Send to blast |
MDGDKNSYTP TPAGPGSSSL QRTRTSHGRS SGPTRRSTKG QWTPEEDEIL RRAVQSFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE IIVELVEKYG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPG INKEAWTQEE ELALIRAHQI YGNKWAELTK FLPGRTDNAI 180 KNHWNSSVKK KLDSYLKSGL LPDFEGTPHV GHQNQPIIAS CSRVQNSGDD SAPRGAEGEE 240 KSECSQDSTV AGGFQSATEM VNVVLNTRDR SHIREVSRLG NDPSSSPASC SEPYFPSMGD 300 ATFAIPEIPP ELVSSSKFIE QTFAHDAGEL MSGDFQFNMQ ELTNISSLES GQEASGMHTH 360 CMSSNEIHDV VNFPFQNASA FPASTSMENM VDGSIKSERM LISDDECCRA LFSEAINQGY 420 YFSREFTNGS SMVDLITCTE SFLQSSSNLQ LSETGRSSQP YCALNLDLVG TPCSQPVSAH 480 EGPLIFAGEP NHLFRVQVQE YVTSSEDAFV HTNDTARSPS TVGGNKTFMQ EQSHLVEDPL 540 DLVPVNTFDS GLDTQTSPAV DVRSDVHTEQ QDDRALCYEP PRFPSLDIPF LSCDLVQSGN 600 DMQQEYSPLG IRQLMMSSMN CLTPFRLWDS PSRDGSPDAV LKSAAKTFTG TPSILKKRHR 660 DLLSPLSPLS DRRIDKKLGT DVTSSLARDF SRLEVMFEAS ETQEAPSHSP SSNQPRDSDG 720 HEEAKENMDT CETRIEEGVD TDEIAQKNFD DSESPEKRKQ GNADVDTCET RIEEGVDTDE 780 IAQKIFDDSE SSEKRKQGND VDANTNAVPS SQDVQQSSGV LTEHNTNDLL LYSPDQAGCK 840 AEKALSLSAK TPKVQRSKSF SAKQGASVIT PTITVKKRES YLVAQTCTQS DSLSAPLETC 900 TNNAGNVACT ETMFGITPLK RSIDSPSAWK SPSAWKSPSA WKSPWFINSF LPGPRVDTEI 960 SIEDIGFFMS PGDRSYDAIG LMKQISEHTA SAYANAQEVL GNDTPESLLK QRRKDHDIMD 1020 LDNDLAPPDQ PGSSSLSAPN VMVERRTLDF SECGTPSKGK ESGKFSNTKT FSSPSSYLLK 1080 GCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-68 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-68 | 39 | 192 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna08793.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004291202.2 | 0.0 | PREDICTED: myb-related protein 3R-1 | ||||
TrEMBL | A0A2P6PZX5 | 0.0 | A0A2P6PZX5_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004291202.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3727 | 33 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | mrna08793.1-v1.0-hybrid |